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  • Accumulated statistics numbers of Citations and Downloads for every BPPB article

Accumulated statistics numbers of Citations and Downloads for every BPPB article

at the end of August 2026

Authors, Journal, Volume, Page/ArticleID/Year Title Cita
tions
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loads
Yuki Okamura et al., Biophys. Physicobiol. Vol. 23, e230028 (2026) Sweet taste stimulation reduced pain ratings associated with increased blood flow in the right dorsolateral prefrontal cortex: A pilot study using NIRS 0 28
Nadia Shoukat et al., Biophys. Physicobiol. Vol. 23, e230027 (2026) PTM-associated condensation of homopolymeric (poly A) RNA by MDP1 0 120
Gakushi Tsuji, Biophys. Physicobiol. Vol. 23, e230026 (2026) Composition dependent effects of charged lipids on freeze-thaw induced fusion in dioleoyl phospholipid membranes 0 103
Haruki Nakamura, Biophys. Physicobiol. Vol. 23, e231002 (2026) The AI era in journal publishing: A viewpoint from an Editor 0 152
Takeharu Nagai, Biophys. Physicobiol. Vol. 23, e231001 (2026) Editorial: Research with AI Scientists: When the author is AI and the editor is AI, too 0 193
Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 23, e230025 (2026) Denoising for high-magnification bioluminescence imaging of cells by machine learning with physics-based noise modeling of EMCCD 0 219
Seine A. Shintani, Biophys. Physicobiol. Vol. 23, e230024 (2026) Structured neighboring-sarcomere switching is coupled to variable-reach internal length redistribution during hyperthermal sarcomeric oscillations in living cardiomyocytes 0 192
Yuki Ohmuro-Matsuyama et al., Biophys. Physicobiol. Vol. 23, e230023 (2026) Effects of surfactants on luminescence intensity and duration of the minimal luciferase picALuc 0 275
Ekaterina Kukushkina et al., Biophys. Physicobiol. Vol. 23, e230022 (2026) Objective quantification of gait impairment in rats using automated video analysis 0 199
Riksa Meidy Karim et al., Biophys. Physicobiol. Vol. 23, e230021 (2026) Theoretical study of KRAS G12C secondary mutations influencing inhibitor resistance" 0 306
Yoshifumi Nishimura, Biophys. Physicobiol. Vol. 23, e230020 (2026) Dynamic networks of intrinsically disordered regions in nuclear proteins 0 473
Shunsuke Shiomi et al., Biophys. Physicobiol. Vol. 23, e230019 (2026) Chlamylipo, a Chlamydomonas-in-liposome microswimmer: Self-propelled swimming and associated lipid membrane flow 0 430
Takahiro Fujiwara and Akihiro Kusumi, Biophys. Physicobiol. Vol. 23, e230018 (2026) Development of ultrafast single fluorescent-molecule imaging and its application to unravel plasma membrane structure and function in live cells 0 459
Yoshiki Tanaka et al., Biophys. Physicobiol. Vol. 23, e230017 (2026) Live imaging of bacterial actin MreBs from Spiroplasma causing helicity switching of a minimal synthetic cell 0 420
Arata Nagai et al., Biophys. Physicobiol. Vol. 23, e230016 (2026) Substrate elasticity controls fibroblast motility on non-oxidized PDMS under weak adhesion 0 358
Hisashi Okumura et al., Biophys. Physicobiol. Vol. 23, e230015 (2026) A lattice Monte Carlo model for amyloid fibril formation 0 513
Kosuke Morikawa et al., Biophys. Physicobiol. Vol. 23, e230014 (2026) Revisiting hydrolytic mechanisms of bacterial RNase HI: Towards clarification of single mobile Mg2+ action in nuclease reactions 0 453
Shigeo Sakuragi et al., Biophys. Physicobiol. Vol. 23, e230013 (2026) DNA-based quantum dot (QD) single-particle tracking for multicolor single-molecule imaging 0 586
Daichi Takahashi et al., Biophys. Physicobiol. Vol. 23, e230012 (2026) Cooperative and divergent properties of bacterial actin isoforms in Spiroplasma swimming 0 732
Seiichiro Hayashi et al., Biophys. Physicobiol. Vol. 23, e230011 (2026) NMR evidence for residue-based LFER relationship in two-state folding-unfolding equilibrium of the spectrin SH3 domain in acidic solutions 0 548
Hironori Hayashi et al., Biophys. Physicobiol. Vol. 23, e230010 (2026) Liquid-liquid phase separation and its regulation of the BACH2 intrinsically disordered region 0 550
Yoshihiko Furuike and Oliver Vanderpoorten, Biophys. Physicobiol. Vol. 23, e230009 (2026) The Norway–Japan bilateral symposium: Dialogue in biophysics beginning in Nara 0 408
Kei Fujiwara et al., Biophys. Physicobiol. Vol. 23, e230008 (2026) Mirror life at the crossroads: Report on the symposia in Japan for discussion toward mirror life synthesis 0 936
Hiroshi Koyama and Yasuhiro Inoue, Biophys. Physicobiol. Vol. 23, e230007 (2026) Modeling of viscous frictional force in multicellular morphogenesis 1 742
Miftakhul Firdhaus et al., Biophys. Physicobiol. Vol. 23, e230006 (2026) Comparative evaluation of electrode configuration for optimizing positive dielectrophoresis trapping of CCRF-CEM cells 0 584
Akane Yato and Masaki Horitani, Biophys. Physicobiol. Vol. 23, e230005 (2026) Mechanistic insights into a cold-adapted glucokinase with high thermal stability were revealed by site-directed spin labeling ESR 0 438
Hiroshi Imamura et al., Biophys. Physicobiol. Vol. 23, e230004 (2026) Resurrecting lost ancient myoglobin proteins to elucidate mechanisms of diving adaptation in mammals 0 746
Haruyuki Fukuzawa et al., Biophys. Physicobiol. Vol. 23, e230003 (2026) Development of electromagnetic tweezers for single-molecule energetics of kinesin 0 1016
Masahiko Imashimizu and Jun-ichi Sugiyama, Biophys. Physicobiol. Vol. 23, e230002 (2026) High-sensitivity method for detecting dielectric changes in water driven by biomolecular hydration 1 662
Atsuki Hishida et al., Biophys. Physicobiol. Vol. 23, e230001 (2026) Analysis of metabolic stability under environmental perturbations using a kinetic model 0 858
Jiyeon Han, Biophys. Physicobiol. Vol. 22, e221006 (2025) From coordination to function: Inorganic insights into metalloproteins and metallopeptides in biosystems 0 401
Takayuki Nishizaka, Biophys. Physicobiol. Vol. 22, e221005 (2025) Brief history of international joint symposiums in BSJ 0 310
Chihong Song, Biophys. Physicobiol. Vol. 22, e221004 (2025) The future of Asian biophysics built through Korea–Japan collaboration 0 386
Katsumi Maenaka, Biophys. Physicobiol. Vol. 22, e221003 (2025) Japan–Korea collaboration on biophysical techniques for drug discovery in infectious diseases: Toward future pandemic preparedness 0 365
Jae-Hyun Park, Biophys. Physicobiol. Vol. 22, e221002 (2025) Korea-Japan Biophysics Collaboration: A journey through microbial rhodopsin research 0 314
Sam-Yong Park and Haruki Nakamura, Biophys. Physicobiol. Vol. 22, e221001 (2025) Towards the International Conference on Biophysics and Biomedical Sciences: ICBBS 2026 0 301
Anne-Idil Farah et al., Biophys. Physicobiol. Vol. 22, e220033 (2025) Molecular dynamics simulations of amyloid-β(29–42) aggregation in bulk water and at the air–water interface 1 600
Ritsu Mizutori et al., Biophys. Physicobiol. Vol. 22, e220032 (2025) Protonation states of highly conserved carboxylic acids in NeoR 0 798
Lin Zhang and Hafumi Nishi, Biophys. Physicobiol. Vol. 22, e220031 (2025) Physicochemical, functional, and evolutionary characteristics of protein loop regions in human and Escherichia coli proteomes 0 668
Yosuke Mizuno et al., Biophys. Physicobiol. Vol. 22, e220030 (2025) Schiff base deprotonation and structural changes in a mouse UV-sensitive cone visual pigment revealed by FTIR spectroscopy at 77 K 0 834
Mako Aoyama et al., Biophys. Physicobiol. Vol. 22, e220029 (2025) FTIR study of the wild-type and mutant proteins of a viral rhodopsin, OLPVR1 0 903
Jiro Kakizaki et al., Biophys. Physicobiol. Vol. 22, e220028 (2025) Selection–diversification interplay in oligonucleotide chemical evolution 2 1350
Haruki Nakamura, Biophys. Physicobiol. Vol. 22, e220027 (2025) Editorial: Announcement of BPPB paper awards 2025 0 596
Anton Schwarz et al., Biophys. Physicobiol. Vol. 22, e220026 (2025) Fractal dimensions for tumour-related cell types of prostate cancer on histopathology images using multiple-threshold box counting algorithm 0 857
Hotaka Kobayashi et al., Biophys. Physicobiol. Vol. 22, e220025 (2025) A platform for analyzing translational control by RBPs at single-mRNA resolution in cells 0 1080
Ritsu Mizutori et al., Biophys. Physicobiol. Vol. 22, e220024 (2025) Molecular properties of a viral heliorhodopsin, V2HeR2 0 1267
Chika Okimura, Biophys. Physicobiol. Vol. 22, e220023 (2025) Stress fiber contraction induces cell body rotation in single keratocytes 0 862
Tomoaki Okaniwa et al., Biophys. Physicobiol. Vol. 22, e220022 (2025) Finding differentially expressed genes between cell fates predicted by image-based deep learning 0 1035
Tony Z. Jia et al., Biophys. Physicobiol. Vol. 22, e220021 (2025) Interdisciplinary investigations into the biophysics of the origins of life 0 847
Masayuki Hayakawa et al., Biophys. Physicobiol. Vol. 22, e220020 (2025) Approaching active matter from biophysics perspective 0 586
Yuhei O. Tahara et al., Biophys. Physicobiol. Vol. 22, e220019 (2025) Visualization of peptidoglycan layer isolated from gliding diderm bacteria, Flavobacterium johnsoniae and Myxococcus xanthus, by quick-freeze deep-etch replica electron microscopy 0 634
Tomoyasu Noji et al., Biophys. Physicobiol. Vol. 22, e220018 (2025) Origin of the unique topology of the triangular water cluster in Rubrobacter xylanophilus rhodopsin 1 657
Masaya Sagara et al., Biophys. Physicobiol. Vol. 22, e220017 (2025) Polymerization and stability of actin conjugated with polyethylene glycol 0 634
Abhishek Mallick et al., Biophys. Physicobiol. Vol. 22, e220016 (2025) Characterizing deterioration of milk through bioimpedance spectroscopy 0 647
Kodai Igarashi et al., Biophys. Physicobiol. Vol. 22, e220015 (2025) Protein–ligand affinity prediction via Jensen-Shannon divergence of molecular dynamics simulation trajectories 0 1061
Hiroto Takahashi et al., Biophys. Physicobiol. Vol. 22, e220014 (2025) HulaChrimson: A Chrimson-like cation channelrhodopsin discovered using freshwater metatranscriptomics from Lake Hula 1 1149
Amari Toshiki et al., Biophys. Physicobiol. Vol. 22, e220013 (2025) Cytoskeleton as a generator of characteristic physical properties of plant cells: ‘cell wall,’ ‘large vacuole,’ and ‘cytoplasmic streaming’ 0 1434
Arima Okutani et al., Biophys. Physicobiol. Vol. 22, e220012 (2025) A method for isolating and cryopreserving intact mitochondria with improved integrity and functionality 4 1062
Junichi Higo et al., Biophys. Physicobiol. Vol. 22, e220011 (2025) A virtual system-coupled molecular dynamics simulation free from experimental knowledge on binding sites: Application to RNA-ligand binding free-energy landscape 0 1107
Kazuma Shimizu et al., Biophys. Physicobiol. Vol. 22, e220010 (2025) A low-cost electric micromanipulator and its application to single-cell electroporation 0 791
Fumiya Kondo et al., Biophys. Physicobiol. Vol. 22, e220009 (2025) Structure-activity relationship of PET-degrading cutinase regulated by weak Ca2+ binding and temperature 1 775
Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 22, e220008 (2025) Genetically-encoded temperature indicators for thermal biology 1 1176
Nobutaka Shimizu et al., Biophys. Physicobiol. Vol. 22, e220007 (2025) Time-resolved small-angle X-ray scattering system development for the biological macromolecules at SACLA: A pilot study 0 997
Kana Suzuki et al., Biophys. Physicobiol. Vol. 22, e220006 (2025) Gliding direction of Mycoplasma mobile correlates with the curved configuration of its cell shape 0 722
Naoki Tomita et al., Biophys. Physicobiol. Vol. 22, e220005 (2025) Exploring hydrophilic sequence space to search for uncharted foldable proteins by AlphaFold2 1 1025
Kochi Sato et al., Biophys. Physicobiol. Vol. 22, e220004 (2025) Improvement in positional accuracy of neural-network predicted hydration sites of proteins by incorporating atomic details of water-protein interactions and site-searching algorithm 0 626
Masataka Yoshimura et al., Biophys. Physicobiol. Vol. 22, e220003 (2025) Product release and substrate entry of aldehyde deformylating oxygenase revealed by molecular dynamics simulations 1 938
Yo Sat et al., Biophys. Physicobiol. Vol. 22, e220002 (2025) Measurement of protoplasmic streaming over the entire body of Physarum plasmodium, and estimation of the transport and mixing of protoplasma through the intricate vein network 3 1142
Yuki Okamura et al., Biophys. Physicobiol. Vol. 22, e220001 (2025) Near-infrared spectroscopic study of blood flow changes in the dorsolateral prefrontal cortex during pain relief by odor stimulation 0 831
Mikio Kataoka et al., Biophys. Physicobiol. Vol. 21, e212013 (2024) Half a Century of Biophysics: A Comparison of Presentation Statistics from the 6th and 21st IUPAB Congresses 1 626
Kumiko Hayashi et al., Biophys. Physicobiol. Vol. 21, e212012 (2024) A round table at IUPAB Congress in Kyoto 2024: Dreaming the next 50 years in our biophysics 0 821
Nathan Nunes Evangelista et al., Biophys. Physicobiol. Vol. 21, e212011 (2024) Constructing virtual DNA-nanomachines 1 438
Lissy M Hartmann et al., Biophys. Physicobiol. Vol. 21, e212010 (2024) Using interactive deep learning to track cells: A report on a 3-day hands-on training program at IUPAB 2024 1 385
Huong T. Vu, Biophys. Physicobiol. Vol. 21, e212009 (2024) DNA nanomachine tutorial 1 516
Nor Akmalyati Sulong et al., Biophys. Physicobiol. Vol. 21, e212008 (2024) GENESIS and CHARMM-GUI: Advances and applications from Hands-on training program C at RIKEN 1 505
Yuze Sun, Biophys. Physicobiol. Vol. 21, e212007 (2024) Hands-on training experience of C-trap 0 461
Asuka Takeda-Sakazume, Biophys. Physicobiol. Vol. 21, e212006 (2024) Experience report of Hands-on Training Program E: Exploring multi-cellular mechanics 1 338
Karina New, Biophys. Physicobiol. Vol. 21, e212005 (2024) IUPAB and BSJ meeting Kyoto: Reflections on hands on workshop “Real-time single-molecule experiments with optical tweezers and correlated fluorescence microscopy” with LUMICKS C-trap, emphasising the importance of practicing international and interdisciplinary science 1 378
Koki Yoshida, Biophys. Physicobiol. Vol. 21, e212004 (2024) Experience of Hands-on training program on DNA Nanomachine at IUPAB2024 1 396
Zuzana Johanovská, Biophys. Physicobiol. Vol. 21, e212003 (2024) Feeling a nanoworld with optical tweezers: Hands on training at IUPAB 2024 1 374
Yuze Sun, Biophys. Physicobiol. Vol. 21, e212002 (2024) Hands-on training experience of C-trap 1 415
Hiroyuki Noji, Biophys. Physicobiol. Vol. 21, e212001 (2024) Editorial: IUPAB2024 Congress in Kyoto 6 678
Michio Hiroshima et al., Biophys. Physicobiol. Vol. 21, e211018 (2024) Application of single-molecule analysis to singularity phenomenon of cells 2 686
Taro Ichimura et al., Biophys. Physicobiol. Vol. 21, e211017 (2024) Strength in numbers: Unleashing the potential of trans-scale scope AMATERAS for massive cell quantification 2 1287
Hideaki Fujita et al., Biophys. Physicobiol. Vol. 21, e211016 (2024) Yuragi biomarker concept for evaluating human induced pluripotent stem cells using heterogeneity-based Raman finger-printing 2 840
Yuriko Yoneda et al., Biophys. Physicobiol. Vol. 21, e211015 (2024) Real-time imaging of human endothelial-to-hematopoietic transition in vitro using pluripotent stem cell derived hemogenic endothelium 1 946
Sulimon Sattari et al., Biophys. Physicobiol. Vol. 21, e211014 (2024) Inferring the roles of individuals in collective systems using information-theoretic measures of influence 2 830
Takeharu Nagai, Biophys. Physicobiol. Vol. 21, e211013 (2024) Editorial: Singularity Biology and Beyond 1 701
Shunsuke Mori  et al., Biophys. Physicobiol. Vol. 21, e211012 (2024) Model systems for discovering evolutionary singularity of bilaterian physiological regulation: lessons from studies on simple/primitive flatworms 0 684
Tomonobu M Watanabe et al., Biophys. Physicobiol. Vol. 21, e211011 (2024) Visualizing Singularity Phenomenon 0 604
Masahiro Ono, Biophys. Physicobiol. Vol. 21, e211010 (2024) Unraveling T-cell dynamics using fluorescent timer: Insights from the Tocky system 1 940
Hisashi Shidara et al., Biophys. Physicobiol. Vol. 21, e211009 (2024) Chromophore-assisted light inactivation of target proteins for singularity biology 2 886
Hiroko Bannai et al., Biophys. Physicobiol. Vol. 21, e211008 (2024) Research on the molecular mechanism of singularity phenomenon in neurological disorders 1 771
Taku Okazaki et al., Biophys. Physicobiol. Vol. 21, e211007 (2024) Elucidating molecular and cellular mechanisms of singularity phenomena in immunology 0 548
Tomoya Katakai et al., Biophys. Physicobiol. Vol. 21, e211006 (2024) A battle between two biological singularities: Immune response vs. cancer 0 768
Katsuyuki Shiroguchi, Biophys. Physicobiol. Vol. 21, e211005 (2024) Integration of single-cell manipulation, whole transcriptome analysis, and image-based deep learning for studying “Singularity Biology” 0 788
Akihiro Sakama et al., Biophys. Physicobiol. Vol. 21, e211004 (2024) Current advances in the development of bioluminescent probes toward spatiotemporal trans-scale imaging 6 1125
Hitoshi Hashimoto et al., Biophys. Physicobiol. Vol. 21, e211003 (2024) Search for singularity cells at the onset of brain disorders using whole-brain imaging 0 605
Rei Shirakawa et al., Biophys. Physicobiol. Vol. 21, e211002 (2024) Regulation of long-term memory by a few clock neurons in Drosophila 1 1030
Kazuki Horikawa et al., Biophys. Physicobiol. Vol. 21, e211001 (2024) Analysis of the singularity cells controlling the pattern formation in multi-cellular systems 1 529
Takayoshi Tsubo, Biophys. Physicobiol. Vol. 21, e210028 (2024) Neuron with well-designed ionic system 0 642
Thi-Hong-Tuoi Do et al., Biophys. Physicobiol. Vol. 21, e210027 (2024) Comparative study of alpha-glucosidase inhibition of four Vietnamese medicinal plants Combretum quadrangulare, Dicranopteris linearis, Psychotria adenophylla, and Garcinia schomburgkiana: In vitro and in vivo studies 2 643
Kentaro Kito et al., Biophys. Physicobiol. Vol. 21, e210026 (2024) Electrophysiological analysis of hyperkalemic cardiomyocytes using a multielectrode array system 0 733
Haruki Nakamura, Biophys. Physicobiol. Vol. 21, e210025 (2024) Announcement of BPPB paper awards 2024 0 443
Atsuko Uenoyama et al., Biophys. Physicobiol. Vol. 21, e210024 (2024) Rapid in vitro method to assemble and transfer DNA fragments into the JCVI-syn3B minimal synthetic bacterial genome through Cre/loxP system 2 809
Shigeo Sakuragi et al., Biophys. Physicobiol. Vol. 21, e210023 (2024) Inducing aggresome and stable tau aggregation in Neuro2a cells with an optogenetic tool 2 1271
Sakura Takada et al., Biophys. Physicobiol. Vol. 21, e210022 (2024) Artificial cell system as a tool for investigating pattern formation mechanisms of intracellular reaction-diffusion waves 2 1229
Akihiro Masuda et al., Biophys. Physicobiol. Vol. 21, e210021 (2024) Data-driven score tuning for ChooseLD: A structure-based drug design algorithm with empirical scoring and evaluation of ligand–protein docking predictability 0 680
Toshiki Yoda et al., Biophys. Physicobiol. Vol. 21, e210020 (2024) Four-color single-molecule imaging system for tracking GPCR dynamics with fluorescent HiBiT peptide 5 1372
Sena Tarumoto et al., Biophys. Physicobiol. Vol. 21, e210019 (2024) Monitoring of enzymatic cleavage reaction of GST-fusion protein on biolayer interferometry sensor 0 604
Takanobu A. Katoh , Biophys. Physicobiol. Vol. 21, e210018 (2024) Function of nodal cilia in left-right determination: Mechanical regulation in initiation of symmetry breaking 6 982
Shunsuke Tomita et al., Biophys. Physicobiol. Vol. 21, e210017 (2024) Chemical tongues as multipurpose bioanalytical tools for the characterization of complex biological samples 5 973
Kohji Ito et al., Biophys. Physicobiol. Vol. 21, e210016 (2024) Unraveling the fastest myosin: Discovery history and structure-function relationships of algae Chara myosin XI 2 1048
Minoru Fukushima et al., Biophys. Physicobiol. Vol. 21, e210015 (2024) Internal structure of Mycoplasma mobile gliding machinery analyzed by negative staining electron tomography 2 905
Hiroyuki Iwamoto et al., Biophys. Physicobiol. Vol. 21, e210014 (2024) X-ray diffraction recording from a small amount of fibrous protein materials oriented by a micro shear-flow cell 0 794
Nasori Nasori et al., Biophys. Physicobiol. Vol. 21, e210013 (2024) Optimizing tumor treating fields for blood cancer therapy: Analysis of electric field distribution and dose density 3 849
Hisashi Shimamura et al., Biophys. Physicobiol. Vol. 21, e210012 (2024) Charge block-driven liquid-liquid phase separation: A mechanism of how phosphorylation regulates phase behavior of disordered proteins 6 1629
Kota Katayama et al., Biophys. Physicobiol. Vol. 21, e210011 (2024) Holistic concepts in GPCR dynamics 1 647
Yusuke Sato et al., Biophys. Physicobiol. Vol. 21, e210010 (2024) Pioneering artificial cell-like structures with DNA nanotechnology-based liquid-liquid phase separation 9 1452
Shang-Te_Danny Hsu, Biophys. Physicobiol. Vol. 21, e210009 (2024) The Asian Biophysics Association: Reborn from the COVID-19 pandemic 2 655
Ananta Kusuma Yoga Pratama et al., Biophys. Physicobiol. Vol. 21, e210008 (2024) Resonance frequency measurement to identify stiffness variations based on photoacoustic imaging 1 834
Chisato Okamoto et al., Biophys. Physicobiol. Vol. 21, e210007 (2024) Molecular dynamics simulation analysis of structural dynamic cross correlation induced by odorant hydrogen-bonding in mouse eugenol ol- factory receptor 11 1043
Seine A. Shintani, Biophys. Physicobiol. Vol. 21, e210006 (2024) Observation of sarcomere chaos induced by changes in calcium concentration in cardiomyocytes 5 1125
Takashi Ohgita et al., Biophys. Physicobiol. Vol. 21, e210005 (2024) Physicochemical mechanisms of aggregation and fibril formation of α-synuclein and apolipoprotein A-I 1 1060
Hiroshi Sunami et al., Biophys. Physicobiol. Vol. 21, e210004 (2024) Shape of scaffold controlling the direction of cell migration 4 952
Hirohito Yamazaki et al., Biophys. Physicobiol. Vol. 21, e210003 (2024) The potential of nanopore technologies toward empowering biophysical research: Brief history, basic principle and applications 2 959
Minoru Kurisu et al., Biophys. Physicobiol. Vol. 21, e210002 (2024) Concepts of a synthetic minimal cell: Information molecules, metabolic pathways, and vesicle reproduction 3 1387
Yoshihiko Furuike et al., Biophys. Physicobiol. Vol. 21, e210001 (2024) Structure-function relationship of KaiC around dawn 2 1728
Junichi Higo et al., Biophys. Physicobiol. Vol. 20, e200047 (2023) Binding free-energy landscapes of small molecule binder and non-binder to FMN riboswitch: All-atom molecular dynamics 4 789
Daisuke Kohda et al., Biophys. Physicobiol. Vol. 20, e200046 (2023) Residue-based correlation between equilibrium and rate constants is an experimental formulation of the consistency principle for smooth structural changes of proteins 3 759
Daiki Fukuhara et al., Biophys. Physicobiol. Vol. 20, e200045 (2023) Inhibition of amyloid-β(16–22) aggregation by polyphenols using replica permutation with solute tempering molecular dynamics simulation 7 826
Takahiro Yamashita et al., Biophys. Physicobiol. Vol. 20, e200044 (2023) Welcome to the borderless rhodopsin world 0 863
Madoka Suzuki et al., Biophys. Physicobiol. Vol. 20, e200043 (2023) Hybrid Biophysics: Interdisciplinary approaches for trans-scale analysis of organism-environment interactions 0 593
Izuru Kawamura et al., Biophys. Physicobiol. Vol. 20, e200042 (2023) Bottom-up creation of cell-free molecular systems: Basic research toward social implementation 0 679
Takashi Sumikama et al., Biophys. Physicobiol. Vol. 20, e200041 (2023) Updating view of membrane transport proteins by simulation studies 0 640
Haruki Nakamura, Biophys. Physicobiol. Vol. 20, e200040 (2023) Announcement of BPPB paper awards 2023 0 610
Hiroyuki Noji, Biophys. Physicobiol. Vol. 20, e200039 (2023) Rocking Out Biophysics in IUPAB2024 Kyoto! 5 920
Junko Nakai et al., Biophys. Physicobiol. Vol. 20, e200038 (2023) Changes in protein phosphorylation by insulin administration in the central nervous system of the gastropod mollusk Lymnaea stagnalis 1 842
Tomohiro Shima et al., Biophys. Physicobiol. Vol. 20, e200037 (2023) The third Japan-U.S. symposium on motor proteins and associated single-molecule biophysics 0 754
Rawiwan Wongnak et al., Biophys. Physicobiol. Vol. 20, e200036 (2023) E. coli production of a multi-disulfide bonded SARS-CoV-2 Omicron BA.5 RBD exhibiting native-like biochemical and biophysical properties 5 974
Yuya Hanazono et al., Biophys. Physicobiol. Vol. 20, e200035 (2023) Description of peptide bond planarity from high-resolution neutron crystallography 3 841
So Nakashima et al., Biophys. Physicobiol. Vol. 20, e200034 (2023) Population dynamics models for various forms of adaptation 0 963
Tohru Minamino et al., Biophys. Physicobiol. Vol. 20, e200033 (2023) Frontiers of microbial movement research 0 910
Ryota Sakamoto et al., Biophys. Physicobiol. Vol. 20, e200032 (2023) Unveiling the physics underlying symmetry breaking of the actin cytoskeleton: An artificial cell-based approach 0 1267
Tatsuya Iida et al., Biophys. Physicobiol. Vol. 20, e200031 (2023) SATORI: Amplification-free digital RNA detection method for the diagnosis of viral infections 8 1325
Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 20, e200030 (2023) Joule heating involving ion currents through channel proteins 4 1483
Hiroki Yasuga, Biophys. Physicobiol. Vol. 20, e200029 (2023) Methods to spontaneously generate three dimensionally arrayed microdroplets triggered by capillarity for bioassays and bioengineering 0 979
Kanji Takahashi et al., Biophys. Physicobiol. Vol. 20, e200028 (2023) Ring formation by Vibrio fusion protein composed of FliF and FliG, MS-ring and C-ring component of bacterial flagellar motor in membrane 4 858
Yutaro Nagasawa et al., Biophys. Physicobiol. Vol. 20, e200027 (2023) LOV2-based photoactivatable CaMKII and its application to single synapses: Local Optogenetics 1 1359
Shunsuke Tagami, Biophys. Physicobiol. Vol. 20, e200026 (2023) Why we are made of proteins and nucleic acids: Structural biology views on extraterrestrial life 2 1564
Manabu Hori et al., Biophys. Physicobiol. Vol. 20, e200025 (2023) RNA interference reveals the escape response mechanism of Paramecium to mechanical stimulation 1 938
Yoshiaki Kinosita et al., Biophys. Physicobiol. Vol. 20, e200024 (2023) Flagellar polymorphism-dependent bacterial swimming motility in a structured environment 3 801
Kenta Odagiri et al., Biophys. Physicobiol. Vol. 20, e200023 (2023) Mathematical model for promotion of wound closure with ATP release 4 756
Shigeyuki Matsumoto et al., Biophys. Physicobiol. Vol. 20, e200022 (2023) Quantitative analysis of protein dynamics using a deep learning technique combined with experimental cryo-EM density data and MD simulations 4 1301
Hiroshi Imamura, Biophys. Physicobiol. Vol. 20, e200021 (2023) Phone2SAS: 3D scanning by smartphone aids the realization of small-angle scattering 1 749
Shingo Wakao et al., Biophys. Physicobiol. Vol. 20, e200020 (2023) Mathematical model of structural changes in nuclear speckle 1 1481
Atsushi Mochizuki, Biophys. Physicobiol. Vol. 20, e200019 (2023) Controlling complex dynamical systems based on the structure of the networks 2 734
Hiromi Miyoshi et al., Biophys. Physicobiol. Vol. 20, e200018 (2023) Guideline for design of substrate stiffness for mesenchymal stem cell culture based on heterogeneity of YAP and RUNX2 responses 5 1281
Tatsuki Negami et al., Biophys. Physicobiol. Vol. 20, e200017 (2023) Calculations of the binding free energies of the Comprehensive in vitro Proarrhythmia Assay (CiPA) reference drugs to cardiac ion channels 2 1186
Tomoyoshi Seto, Biophys. Physicobiol. Vol. 20, e200016 (2023) General anesthetic binding mode via hydration with weak affinity and molecular discrimination: General anesthetic dissolution in interfacial water of the common binding site of GABAA receptor 1 1030
Takashi Tominaga et al., Biophys. Physicobiol. Vol. 20, e200015 (2023) Stable wide-field voltage imaging for observing neuronal plasticity at the neuronal network level 3 1012
Yasuha Watanabe et al., Biophys. Physicobiol. Vol. 20, e200014 (2023) Molecular mechanisms of the high performance of spider silks revealed through multi-omics analysis 12 1520
Keiichi Yamaguchi  et al., Biophys. Physicobiol. Vol. 20, e200013 (2023) Mechanisms of polyphosphate-induced amyloid fibril formation triggered by breakdown of supersaturation 7 970
Tony Z. Jia et al., Biophys. Physicobiol. Vol. 20, e200012 (2023) Recent progress in primitive polyester synthesis and membraneless microdroplet assembly 4 1245
Takayuki Umakoshi, Biophys. Physicobiol. Vol. 20, e200011 (2023) Near-field optical microscopy toward its applications for biological studies 6 1042
Hirohito Yamazaki et al., Biophys. Physicobiol. Vol. 20, e200010 (2023) Accelerating biophysical studies and applications by label-free nanopore sensing 0 1001
Kohei Otomo et al., Biophys. Physicobiol. Vol. 20, e200009 (2023) Improving two-photon excitation microscopy for sharper and faster biological imaging 1 1157
Toshiki Yagi et al., Biophys. Physicobiol. Vol. 20, e200008 (2023) Regulation of motor activity of ciliary outer-arm dynein by the light chain 1; Implications from the structure of the light chain bound to the microtubule-binding domain of the heavy chain 1 991
Hidekazu Hiroaki, Biophys. Physicobiol. Vol. 20, e200007 (2023) Molecular mechanisms of amyloid-β peptide fibril and oligomer formation: NMR-based challenges 8 1525
Shintaroh Kubo et al., Biophys. Physicobiol. Vol. 20, e200006 (2023) Removing the parachuting artifact using two-way scanning data in high-speed atomic force microscopy 9 1360
Tomoyoshi Seto, Biophys. Physicobiol. Vol. 20, e200005 (2023) General anesthetic binding mode via hydration with weak affinity and molecular discrimination: General anesthetic dissolution in interfacial water of the common binding site of GABAA receptor 1 865
Akiko Yamada et al., Biophys. Physicobiol. Vol. 20, e200004 (2023) Regulatory mechanisms of mitochondrial calcium uptake by the calcium uniporter complex 5 900
Kanta Fujimoto et al., Biophys. Physicobiol. Vol. 20, e200003 (2023) Revisiting oxytocin generation in keratinocytes 6 938
Atsushi Hirano, Biophys. Physicobiol. Vol. 20, e200002 (2023) What is Aromaphilicity? 2 791
Kento Yonezawa et al., Biophys. Physicobiol. Vol. 20, e200001 (2023) MOLASS: Software for automatic processing of matrix data obtained from small-angle X-ray scattering and UV–visible spectroscopy combined with size-exclusion chromatography 16 1392
María del Carmen Marín et al., Biophys. Physicobiol. Vol. 20, e201023 (2023) Biophysical characterization of microbial rhodopsins with DSE motif 2 1236
Takayuki Uchihashi et al., Biophys. Physicobiol. Vol. 20, e201022 (2023) Introduction of Session 2, “Advanced methods for retinal proteins” 0 467
Yuki Sudo, Biophys. Physicobiol. Vol. 20, e201021 (2023) Introduction of Session 1, “Photochemistry of retinal proteins” 0 477
Hiroo Imai et al., Biophys. Physicobiol. Vol. 20, e201020 (2023) Optogenetics II, sponsored by JST: Report for the session 13 0 427
Hiroo Imai et al., Biophys. Physicobiol. Vol. 20, e201019 (2023) Functional diversity and evolution in animal rhodopsins: Report for the session 11 0 546
Hiroo Imai  et al., Biophys. Physicobiol. Vol. 20, e201018 (2023) Function of animal rhodopsins and related proteins: Report for the session 9 0 403
Sui Arikawa et al., Biophys. Physicobiol. Vol. 20, e201017 (2023) Solid-state NMR for the characterization of retinal chromophore and Schiff base in TAT rhodopsin embedded in membranes under weakly acidic conditions 6 748
Akihiro Otomo et al., Biophys. Physicobiol. Vol. 20, e201016 (2023) Protein dynamics of a light-driven Na+ pump rhodopsin probed using a tryptophan residue near the retinal chromophore 0 956
Takeshi Murata, Biophys. Physicobiol. Vol. 20, e201015 (2023) Introduction of Session 8, “Structural mechanism of animal rhodopsins and GPCR” 0 462
Tsutomu Kouyama et al., Biophys. Physicobiol. Vol. 20, e201014 (2023) Structural mechanism of microbial rhodopsins: Report for the session 4 at the 19th International Conference on Retinal Proteins 0 544
Yoshitaka Fukada, Biophys. Physicobiol. Vol. 20, e201013 (2023) Recent advances in biological rhythm and non-visual photoreception: Report for the session 10 at the 19th International Conference on Retinal Proteins 1 605
Takeshi Murata, Biophys. Physicobiol. Vol. 20, e201012 (2023) Introduction of Session 7, “Functional diversity and evolution in microbial rhodopsins” 0 463
Elena G. Govorunova et al., Biophys. Physicobiol. Vol. 20, e201011 (2023) Potassium-selective channelrhodopsins 9 1160
Peter Hegemann et al., Biophys. Physicobiol. Vol. 20, e201010 (2023) Dieter Oesterhelt (1940–2022): Life with light and color, pioneer of membrane protein research 2 1450
Kazumi Shimono et al., Biophys. Physicobiol. Vol. 20, e201009 (2023) Recent advances in signaling and activation mechanism in microbial rhodopsins: Report for the session 6 at the 19th International Conference on Retinal Proteins 0 565
Kumari Sushmita et al., Biophys. Physicobiol. Vol. 20, e201008 (2023) Algal rhodopsins encoding diverse signal sequence holds potential for expansion of organelle optogenetics 2 1132
Jonathan R. Church et al., Biophys. Physicobiol. Vol. 20, e201007 (2023) Induction effects on the absorption maxima of photoreceptor proteins 2 983
Mikio Kataoka, Biophys. Physicobiol. Vol. 20, e201006 (2023) Structural studies of bacteriorhodopsin in BC era 1 831
Yuji Furutani et al., Biophys. Physicobiol. Vol. 20, e201005 (2023) Ion-transporting mechanism in microbial rhodopsins: Mini-review relating to the session 5 at the 19th International Conference on Retinal Proteins 1 1038
Satoru Kawamura et al., Biophys. Physicobiol. Vol. 20, e201004 (2023) Introduction of Session 14, “Physiology of retinal proteins” 0 416
Chii-Shen Yang et al., Biophys. Physicobiol. Vol. 20, e201003 (2023) From activation dynamics to functional diversity of retinal proteins: Report for the session 3 at the 19th International Conference on Retinal Proteins 0 516
Mikio Kataoka et al., Biophys. Physicobiol. Vol. 20, e201002 (2023) Recent advances in optogenetics: Report for the session 12 at the 19th International Conference on Retinal Proteins 0 703
Yuki Sudo et al., Biophys. Physicobiol. Vol. 20, e201001 (2023) Forewords to the special issue “Recent advances in retinal protein research 1 603
Sristilekha Nath et al., Biophys. Physicobiol. Vol. 19, e190048 (2022) Intestinal and optic-cup organoids as tools for unveiling mechanics of self-organizing morphogenesis 2 1089
Tasuku Hirayama et al., Biophys. Physicobiol. Vol. 19, e190047 (2022) Live-cell imaging of bio-metal species 0 708
Tohru Minamino et al., Biophys. Physicobiol. Vol. 19, e190046 (2022) Activation mechanism of the bacterial flagellar dual-fuel protein export engine 7 1020
Tsutomu Yamane et al., Biophys. Physicobiol. Vol. 19, e190045 (2022) Development of the force field for cyclosporine A 2 1612
Akira Kitamura et al., Biophys. Physicobiol. Vol. 19, e190044 (2022) Physico- and chemical biology using nanomanipulation and micromanipulation technologies 0 779
Kazuma Yasuhara et al., Biophys. Physicobiol. Vol. 19, e190043 (2022) Creation of supramolecular biomembrane by the bottom-up self-assembly: Where material science meets biophysics 3 839
Haruki Nakamura, Biophys. Physicobiol. Vol. 19, e190042 (2022) Announcement of BPPB paper awards 2022 0 701
Chiaki Seto et al., Biophys. Physicobiol. Vol. 19, e190041 (2022) Influence of gap junctions upon Ca2+ propagation from stimulated keratinocytes to DRG neurons 3 1142
Masami Lintuluoto et al., Biophys. Physicobiol. Vol. 19, e190040 (2022) Investigation on substrate specificity and catalytic activity of serine protease neuropsin 4 1049
Akihiro Otomo et al., Biophys. Physicobiol. Vol. 19, e190039 (2022) Tackle “Molecular Engine” by early-career researchers 0 886
Haruki Nakamura, Biophys. Physicobiol. Vol. 19, e190038 (2022) Announcement of new Editorial Board members 1 785
Akira Sasaki et al., Biophys. Physicobiol. Vol. 19, e190037 (2022) Standardization of luminescence, fluorescence measurements, and light microscopy: Current situation and perspectives 2 897
Hiroyuki Ebata et al., Biophys. Physicobiol. Vol. 19, e190036 (2022) Interplay among cell migration, shaping, and traction force on a matrix with cell-scale stiffness heterogeneity 0 1626
Naoki Yamamoto et al., Biophys. Physicobiol. Vol. 19, e190035 (2022) Protein large-scale motions revealed by quantum beams: A new era in understanding protein dynamics 0 1002
Shingo Sotoma et al., Biophys. Physicobiol. Vol. 19, e190034 (2022) Quantum nanodiamonds for sensing of biological quantities: Angle, temperature, and thermal conductivity 16 2126
Kayo Hibino, Biophys. Physicobiol. Vol. 19, e190033 (2022) Participation in 44th Indian Biophysical Society Meeting 0 826
Ryo Iizuka et al., Biophys. Physicobiol. Vol. 19, e190032 (2022) Zero-mode waveguides and nanopore-based sequencing technologies accelerate single-molecule studies 9 2287
Makito Miyazaki et al., Biophys. Physicobiol. Vol. 19, e190031 (2022) Uncovering the design principles of supramolecular assemblies through manipulation of the structures, dynamics, and functions 0 1003
Kumiko Hayashi et al., Biophys. Physicobiol. Vol. 19, e190030 (2022) Japan–US symposium on motor proteins and associated single-molecule biophysics 1 921
Madoka Suzuki et al., Biophys. Physicobiol. Vol. 19, e190029 (2022) A five-course meal symposium on “The Future of Muscle is Now” 1 939
Ryo Kitahara et al., Biophys. Physicobiol. Vol. 19, e190028 (2022) Phase separation by biopolymers: Basics and applications 0 1053
Takeru Kameda et al., Biophys. Physicobiol. Vol. 19, e190027 (2022) Molecular dynamics analysis of biomolecular systems including nucleic acids 8 2363
Takuya Ohmura et al., Biophys. Physicobiol. Vol. 19, e190026 (2022) Simple dynamics underlying the survival behaviors of ciliates 4 1613
Ha T. T. Duong et al., Biophys. Physicobiol. Vol. 19, e190025 (2022) Computational study of the impact of nucleotide variations on highly conserved proteins: In the case of actin 1 1284
Takahiro Muraoka et al., Biophys. Physicobiol. Vol. 19, e190024 (2022) Biophysical elucidation of neural network and chemical regeneration of neural tissue 0 1103
Matsuyuki Shirota et al., Biophys. Physicobiol. Vol. 19, e190023 (2022) Current status and future perspectives of the evaluation of missense variants by using three-dimensional structures of proteins 0 1245
Daisuke Kuroda et al., Biophys. Physicobiol. Vol. 19, e190022 (2022) Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease 12 1949
Kenji Mishima et al., Biophys. Physicobiol. Vol. 19, e190021 (2022) Estimation of the relative contributions to the electronic energy transfer rates based on Förster theory: The case of C-phycocyanin chromophores 15 2619
Kyoko Shinzawa-Itoh et al., Biophys. Physicobiol. Vol. 19, e190020 (2022) Biochemical and crystallographic studies of monomeric and dimeric bovine cytochrome c oxidase 3 2129
Izuru Kawamura et al., Biophys. Physicobiol. Vol. 19, e190019 (2022) Structure of a retinal chromophore of dark-adapted middle rhodopsin as studied by solid-state nuclear magnetic resonance spectroscopy 0 1477
Masayuki Oda, Biophys. Physicobiol. Vol. 19, e190018 (2022) Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme and its engineering: application to enzymatic PET depolymerization 2 1607
Koya Sakuma, Biophys. Physicobiol. Vol. 19, e190017 (2022) Limitations of the ABEGO-based backbone design: ambiguity between αα-corner and αα-hairpin 3 1429
Takamitsu J Morikawa et al., Biophys. Physicobiol. Vol. 19, e190016 (2022) Glycine insertion modulates the fluorescence properties of Aequorea victoria green fluorescent protein and its variants in their ambient environment 11 2360
Keisuke Inoue et al., Biophys. Physicobiol. Vol. 19, e190015 (2022) Coarse-grained molecular dynamics simulations of base-pair mismatch recognition protein MutS sliding along DNA 5 1582
Etsuro Ito et al., Biophys. Physicobiol. Vol. 19, e190014 (2022) Dorsolateral prefrontal cortex sensing analgesia 7 2080
Toru Kondo et al., Biophys. Physicobiol. Vol. 19, e190013 (2022) Recent advances in single-molecule spectroscopy studies on light-harvesting processes in oxygenic photosynthesis 9 2133
Shinjiro Nakahata et al., Biophys. Physicobiol. Vol. 19, e190012 (2022) Mathematical model of chromosomal dynamics during DNA double strand break repair in budding yeast 1 1650
Takao K. Suzuki, Biophys. Physicobiol. Vol. 19, e190011 (2022) Phenotypic systems biology for organisms: Concepts, methods and case studies 4 2317
Yuhei Tachi et al., Biophys. Physicobiol. Vol. 19, e190010 (2022) Molecular dynamics simulations of amyloid-β peptides in heterogeneous environments 11 1998
Fumiaki Kono et al., Biophys. Physicobiol. Vol. 19, e190009 (2022) Current status of neutron crystallography in structural biology 20 1898
Damien Simon et al., Biophys. Physicobiol. Vol. 19, e190008 (2022) Slow and temperature-compensated autonomous disassembly of KaiB–KaiC complex 6 1855
Hideaki Yoshimura , Biophys. Physicobiol. Vol. 19, e190007 (2022) Triple-color single-molecule imaging for analysis of the role of receptor oligomers in signal transduction 0 2377
Hiroaki Yokota, Biophys. Physicobiol. Vol. 19, e190006 (2022) Quantitative and kinetic single-molecule analysis of DNA unwinding by Escherichia coli UvrD helicase 4 2135
Taro Furubayashi et al., Biophys. Physicobiol. Vol. 19, e190005 (2022) How evolution builds up complexity?: In vitro evolution approaches to witness complexification in artificial molecular replication systems 0 2583
Satoru Tokutomi et al., Biophys. Physicobiol. Vol. 19, e190004 (2022) A variety of photoreceptors and the frontiers of optogenetics 0 2106
Yuka Oka et al., Biophys. Physicobiol. Vol. 19, e190003 (2022) Ionic strength-sensitive and pH-insensitive interactions between C-reactive protein (CRP) and an anti-CRP antibody 9 2505
Ryohei Kondo et al., Biophys. Physicobiol. Vol. 19, e190002 (2022) Information quantity for secondary structure propensities of protein subsequences in the Protein Data Bank 0 1729
Takashi Fujishiro et al., Biophys. Physicobiol. Vol. 19, e190001 (2022) Structural diversity of cysteine desulfurases involved in iron-sulfur cluster biosynthesis 25 2256
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S076 (2021) Appendix 0 229
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S066 (2021) Chapter 8: Brownian Motion 0 414
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S056 (2021) Chapter 7: Local Temperature 0 341
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S044 (2021) Part II. Application of Statistical Mechanics in Biological Phenomena6.1 0 464
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S041 (2021) Chapter 5: Summary of Part I 0 414
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S035 (2021) Chapter 4: Always “Now” is the Peak Moment 0 401
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S025 (2021) Chapter 3: Changing the Rules 0 417
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S012 (2021) Chapter 2: Consumption Tax in the World of Molecules 0 596
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S008 (2021) Part I. Experiencing the basics of statistical mechanics using your hands 0 675
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S003 (2021) Oosawa’s Preface 0 581
Editorial team for the Special Issue on Oosawa’s Lectures, Biophys. Physicobiol. Vol. 18S, S001 (2021) Editorial: English translation of “The Oosawa Lectures on DIY Statistical Mechanics” 1 869
Takashi Kikukawa, Biophys. Physicobiol. Vol. 18, 317 (2021) Unique Cl– pump rhodopsin with close similarity to H+ pump rhodopsin 2 733
Hiroaki Hata et al., Biophys. Physicobiol. Vol. 18, 305 (2021) Binding free energy of protein/ligand complexes calculated using dissociation Parallel Cascade Selection Molecular Dynamics and Markov state model 64 2204
Takayoshi Tsubo, Biophys. Physicobiol. Vol. 18, 290 (2021) Analysis of the mechanism of synaptic integration focusing on the charge held in the spine 1 1192
Haruki Nakamura, Biophys. Physicobiol. Vol. 18, 289 (2021) Announcement of BPPB paper awards 2021 0 526
Naoki Yamamoto et al., Biophys. Physicobiol. Vol. 18, 284 (2021) Protein hydration and its freezing phenomena: Toward the application for cell freezing and frozen food storage 3 896
Katsumasa Irie, Biophys. Physicobiol. Vol. 18, 274 (2021) The insights into calcium ion selectivity provided by ancestral prokaryotic ion channels 5 1196
Tony Z. Jia et al., Biophys. Physicobiol. Vol. 18, 269 (2021) Increasing complexity of primitive compartments 3 993
Shuji Akiyama et al., Biophys. Physicobiol. Vol. 18, 267 (2021) Beyond multi-disciplinary and cross-scale analyses of the cyanobacterial circadian clock system 0 729
Haruki Nakamura et al., Biophys. Physicobiol. Vol. 18, 265 (2021) Technical development and sharing of high-resolution cryo-electron microscopes 1 835
Akihiko Ishijima et al., Biophys. Physicobiol. Vol. 18, 263 (2021) Information biophysics of gradient sensing in organisms 0 795
Takuma Sugi et al., Biophys. Physicobiol. Vol. 18, 254 (2021) Collective pattern formations of animals in active matter physics 2 1121
Chan-Gi Pack, Biophys. Physicobiol. Vol. 18, 244 (2021) Application of quantitative cell imaging using label-free optical diffraction tomography 4 1115
Kumiko Hayashi et al., Biophys. Physicobiol. Vol. 18, 241 (2021) Japan-US symposium on cytoskeletal motor proteins and their associated proteins 2 771
Atsushi Hijikata et al., Biophys. Physicobiol. Vol. 18, 226 (2021) Current status of structure-based drug repurposing against COVID-19 by targeting SARS-CoV-2 proteins 8 1129
Hiroyuki Noji, Biophys. Physicobiol. Vol. 18, 224 (2021) Greetings from the President of Biophysical Society of Japan: Traditionally open culture for fostering creative biophysics 0 629
Haruki Nakamura, Biophys. Physicobiol. Vol. 18, 223 (2021) Improve publishing procedures of Biophysics and Physicobiology 0 478
Daisuke Kuroda et al., Biophys. Physicobiol. Vol. 18, 215 (2021) Microsecond molecular dynamics suggest that a non-synonymous mutation, frequently observed in patients with mild symptoms in Tokyo, alters dynamics of the SARS-CoV-2 main protease 3 1035
Kenji Mishima et al., Biophys. Physicobiol. Vol. 18, 196 (2021) Estimation of the relative contributions to the electronic energy transfer rates based on Förster theory: The case of C-phycocyanin chromophores 4 1192
Kyoko Shinzawa-Itoh et al., Biophys. Physicobiol. Vol. 18, 186 (2021) Biochemical and crystallographic studies of monomeric and dimeric bovine cytochrome c oxidase 4 1499
Izuru Kawamura et al., Biophys. Physicobiol. Vol. 18, 177 (2021) Structure of a retinal chromophore of dark-adapted middle rhodopsin as studied by solid-state nuclear magnetic resonance spectroscopy 6 1387
Masayuki Oda, Biophys. Physicobiol. Vol. 18, 168 (2021) Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme and its engineering: application to enzymatic PET depolymerization 14 1314
Koya Sakuma, Biophys. Physicobiol. Vol. 18, 159 (2021) Limitations of the ABEGO-based backbone design: ambiguity between αα-corner and αα-hairpin 0 1489
Takamitsu J Morikawa et al., Biophys. Physicobiol. Vol. 18, 145 (2021) Glycine insertion modulates the fluorescence properties of Aequorea victoria green fluorescent protein and its variants in their ambient environment 1 1253
Udoy S. Basak et al., Biophys. Physicobiol. Vol. 18, 131 (2021) Transfer entropy dependent on distance among agents in quantifying leader-follower relationships 8 1912
Masashi Unno et al., Biophys. Physicobiol. Vol. 18, 127 (2021) Spectroscopic approach for exploring structure and function of photoreceptor proteins 2 991
Yusuke Sato et al., Biophys. Physicobiol. Vol. 18, 116 (2021) DNA nanotechnology provides an avenue for the construction of programmable dynamic molecular systems 3 1982
Teppei Sugimoto et al., Biophys. Physicobiol. Vol. 18, 108 (2021) Role of Thr82 for the unique photochemistry of TAT rhodopsin 9 1270
Ryota Kojima et al., Biophys. Physicobiol. Vol. 18, 96 (2021) A measure for the identification of preferred particle orientations in cryo-electron microscopy data: A simulation study 3 1375
Seine A. Shintani, Biophys. Physicobiol. Vol. 18, 85 (2021) Effects of high-pressure treatment on the structure and function of myofibrils 6 1092
Maki Kawasaki et al., Biophys. Physicobiol. Vol. 18, 78 (2021) DNA-binding function of c-Myb R2R3 around thermal denaturation temperature 4 916
Katsumi Omagari et al., Biophys. Physicobiol. Vol. 18, 67 (2021) Application of fluorescent-based technology detecting protein-protein interactions to monitor the binding of hepatitis B virus X protein to DNA-damage-binding protein 1 1 917
Masahiro Kinoshita, Biophys. Physicobiol. Vol. 18, 60 (2021) On the functioning mechanism of an ATP-driven molecular motor 3 982
Yasumichi Takase et al., Biophys. Physicobiol. Vol. 18, 50 (2021) Structure elements can be predicted using the contact volume among protein residues 1 1004
Shunpei Hanai et al., Biophys. Physicobiol. Vol. 18, 40 (2021) Light-induced difference FTIR spectroscopy of primate blue-sensitive visual pigment at 163 K 7 1065
Yuta Kyosei et al., Biophys. Physicobiol. Vol. 18, 28 (2021) Antigen tests for COVID-19 35 3218
Aya Okuda et al., Biophys. Physicobiol. Vol. 18, 16 (2021) Deuteration Aiming for Neutron Scattering 15 2439
Mikio Kataoka et al., Biophys. Physicobiol. Vol. 18, 13 (2021) Expanding horizons of biosciences by light-control 0 754
Ryo Yoshizawa et al., Biophys. Physicobiol. Vol. 18, 1 (2021) Biphasic spatiotemporal regulation of GRB2 dynamics by p52SHC for transient RAS activation 8 1190
Junichi Higo et al., Biophys. Physicobiol. Vol. 17, 161 (2020) GA-guided mD-VcMD: A genetic-algorithm-guided method for multi-dimensional virtual-system coupled molecular dynamics 10 1194
Masaru Hoshino, Biophys. Physicobiol. Vol. 17, 159 (2020) Letter to the Editor: A still unresolved mystery in the interaction between intrinsically disordered proteins: How do they recognize multiple target proteins? A commentary on “No folding upon binding of intrinsically disordered proteins: Still interesting but not unique and novel. by Sigalov, A. B., Biophysics and Physicobiology 17, 156–158 (2020). DOI: 10.2142/biophysico.BSJ-2020025” 1 408
Alexander B. Sigalov, Biophys. Physicobiol. Vol. 17, 156 (2020) Letter to the Editor: No folding upon binding of intrinsically disordered proteins: Still interesting but not unique and novel. A commentary on “A novel mode of interaction between intrinsically disordered proteins. by Hibino, E. and Hoshino, M., Biophysics and Physicobiology 17, 86–93 (2020). DOI: 10.2142/biophysico.BSJ-2020012” 2 447
Munehito Arai et al., Biophys. Physicobiol. Vol. 17, 155 (2020) Editorial 0 385
Hiroto Anbo et al., Biophys. Physicobiol. Vol. 17, 147 (2020) NeProc predicts binding segments in intrinsically disordered regions without learning binding region sequences 2 960
Kota Kasahara et al., Biophys. Physicobiol. Vol. 17, 140 (2020) myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling 12 1001
Yuki Kogo et al., Biophys. Physicobiol. Vol. 17, 132 (2020) Rapid differentiation of human dental pulp stem cells to neuron-like cells by high K+ stimulation 14 1457
Akihiko Ishijima et al., Biophys. Physicobiol. Vol. 17, 130 (2020) Information physics of living matters 0 1017
Kazuma Yasuhara et al., Biophys. Physicobiol. Vol. 17, 125 (2020) New lipid membrane technologies for reconstitution, analysis, and utilization of ‘living’ membrane proteins 2 978
Ryuma Sato et al., Biophys. Physicobiol. Vol. 17, 113 (2020) Theoretical insights into the DNA repair function of Arabidopsis thaliana cryptochrome-DASH 4 1017
Jia-Siang Sum et al., Biophys. Physicobiol. Vol. 17, 103 (2020) Spectroscopic and structural characteristics of a dual-light sensor protein, PYP-phytochrome related protein 1 896
Keiko Nonomura et al., Biophys. Physicobiol. Vol. 17, 100 (2020) Cell mechanosensing underlies homeostasis of multicellular systems 2 755
Takeharu Nagai et al., Biophys. Physicobiol. Vol. 17, 98 (2020) Detection of singularity in immunity and cancer by novel imaging techniques 2 1135
Hitomi Sawai et al., Biophys. Physicobiol. Vol. 17, 94 (2020) Integrated bio-metal science: New frontiers of bio-metal science opened with cutting-edge techniques 0 920
Emi Hibino et al., Biophys. Physicobiol. Vol. 17, 86 (2020) A novel mode of interaction between intrinsically disordered proteins 9 1338
Daniel Dai et al., Biophys. Physicobiol. Vol. 17, 71 (2020) Identification and mapping of central pair proteins by proteomic analysis 23 1696
Yujiro Nagasaka et al., Biophys. Physicobiol. Vol. 17, 59 (2020) Gate-keeper of ion transport—a highly conserved helix-3 tryptophan in a channelrhodopsin chimera, C1C2/ChRWR 4 1199
Akihiko Nakamura et al., Biophys. Physicobiol. Vol. 17, 51 (2020) Crystalline chitin hydrolase is a burnt-bridge Brownian motor 6 1318
Satoshi Toda, Biophys. Physicobiol. Vol. 17, 42 (2020) Synthetic tissue engineering: Programming multicellular self-organization by designing customized cell-cell communication 6 1905
Yudai Yamaoki et al., Biophys. Physicobiol. Vol. 17, 36 (2020) Observation of nucleic acids inside living human cells by in-cell NMR spectroscopy 11 1256
Damien Hall, Biophys. Physicobiol. Vol. 17, 30 (2020) A simple method for modeling amyloid kinetics featuring position biased fiber breakage 4 973
Takuya Yoshizawa et al., Biophys. Physicobiol. Vol. 17, 25 (2020) Effect of nuclear import receptors on liquid–liquid phase separation 5 1537
Natsuki Mukuta et al., Biophys. Physicobiol. Vol. 17, 14 (2020) Potential energy landscape and thermodynamic transitions of coarse-grained protein models revealed by the multicanonical generalized hybrid Monte Carlo method 2 1009
Shumpei Matsuno et al., Biophys. Physicobiol. Vol. 17, 2 (2020) Multidomain protein structure prediction using information about residues interacting on multimeric protein interfaces 3 976
Haruki Nakamura, Biophys. Physicobiol. Vol. 17, 1 (2020) Editorial 0 603
Lihsin Lee, Biophys. Physicobiol. Vol. 16, 490 (2019) Bohr equation and the lost allosteric Bohr effects in symmetry 2 700
Itaru Onishi et al., Biophys. Physicobiol. Vol. 16, 485 (2019) A tool written in Scala for preparation and analysis in MD simulation and 3D-RISM calculation of biomolecules 1 632
Bang-Chieh Huang et al., Biophys. Physicobiol. Vol. 16, 473 (2019) Molecular dynamics simulations and linear response theories jointly describe biphasic responses of myoglobin relaxation and reveal evolutionarily conserved frequent communicators 4 856
Nobuhiko Kajinami et al., Biophys. Physicobiol. Vol. 16, 466 (2019) Polymer brush in articular cartilage lubrication: Nanoscale modelling and simulation 9 765
Teikichi Ikura et al., Biophys. Physicobiol. Vol. 16, 452 (2019) Mutational effects of Cys113 on structural dynamics of Pin1 3 764
Jean-François Gibrat, Biophys. Physicobiol. Vol. 16, 444 (2019) On the use of algebraic topology concepts to check the consistency of genome assembly 0 688
Atsushi Tokuhisa, Biophys. Physicobiol. Vol. 16, 430 (2019) Characterization of X-ray diffraction intensity function from a biological molecule for single particle imaging 3 545
Yutaka Maruyama et al., Biophys. Physicobiol. Vol. 16, 407 (2019) Analysis of molecular dynamics simulations of 10-residue peptide, chignolin, using statistical mechanics: Relaxation mode analysis and three-dimensional reference interaction site model theory 7 1095
Takeshi Kawabata, Biophys. Physicobiol. Vol. 16, 391 (2019) Detection of cave pockets in large molecules: Spaces into which internal probes can enter, but external probes from outside cannot 27 920
Toru Ekimoto et al., Biophys. Physicobiol. Vol. 16, 377 (2019) Combination of coarse-grained molecular dynamics simulations and small-angle X-ray scattering experiments 4 1028
Miki Nakano et al., Biophys. Physicobiol. Vol. 16, 367 (2019) Parameter optimization for 3D-reconstruction from XFEL diffraction patterns based on Fourier slice matching 2 747
Yuko Okamoto, Biophys. Physicobiol. Vol. 16, 344 (2019) Protein structure predictions by enhanced conformational sampling methods 4 1049
Hidetoshi Kono et al., Biophys. Physicobiol. Vol. 16, 337 (2019) Free energy profile for unwrapping outer superhelical turn of CENP-A nucleosome 8 706
Ruth Veevers et al., Biophys. Physicobiol. Vol. 16, 328 (2019) Methodological improvements for the analysis of domain movements in large biomolecular complexes 34 1375
Takahisa Yamato et al., Biophys. Physicobiol. Vol. 16, 322 (2019) Normal mode analysis and beyond 12 1295
Ai Shinobu et al., Biophys. Physicobiol. Vol. 16, 310 (2019) Building a macro-mixing dual‑basin Gō model using the Multistate Bennett Acceptance Ratio 5 952
Rie Koga et al., Biophys. Physicobiol. Vol. 16, 304 (2019) Consistency principle for protein design 11 1366
Kazuhiro Takemura et al., Biophys. Physicobiol. Vol. 16, 295 (2019) More efficient screening of protein-protein complex model structures for reducing the number of candidates 4 831
Arina Afanasyeva et al., Biophys. Physicobiol. Vol. 16, 287 (2019) Prediction of the secondary structure of short DNA aptamers 34 2088
Ryotaro Koike et al., Biophys. Physicobiol. Vol. 16, 280 (2019) All Atom Motion Tree detects side chain-related motions and their coupling with domain motion in proteins 2 662
Mikio Kataoka et al., Biophys. Physicobiol. Vol. 16, 274 (2019) Mechanism of the light-driven proton pump of bacteriorhodopsin based on the consistency principle 6 753
Sarbani Chattopadhyaya et al., Biophys. Physicobiol. Vol. 16, 264 (2019) A collective motion description of tubulin βT7 loop dynamics 11 664
Nobuhiro Go, Biophys. Physicobiol. Vol. 16, 256 (2019) Snake cube puzzle and protein folding 4 2024
Shoji Takada, Biophys. Physicobiol. Vol. 16, 248 (2019) Gō model revisited 47 1929
Yasumasa Joti et al., Biophys. Physicobiol. Vol. 16, 240 (2019) Cancellation between auto- and mutual correlation contributions of protein/water dynamics in terahertz time-domain spectra 3 608
Kei Moritsugu et al., Biophys. Physicobiol. Vol. 16, 232 (2019) Allosteric response to ligand binding: Molecular dynamics study of the N-terminal domains in IP3 receptor 6 635
Hiroshi Wako et al., Biophys. Physicobiol. Vol. 16, 220 (2019) Dynamic properties of oligomers that characterize low-frequency normal modes 3 630
Hiroshi Nakagawa et al., Biophys. Physicobiol. Vol. 16, 213 (2019) How can we derive hydration water dynamics with incoherent neutron scattering and molecular dynamics simulation? 7 840
Shigeru Endo et al., Biophys. Physicobiol. Vol. 16, 205 (2019) Normal mode analysis calculation for a full-atom model with a smaller number of degrees of freedom for huge protein molecules 0 642
Tatsushi Nishimoto et al., Biophys. Physicobiol. Vol. 16, 196 (2019) Replica exchange molecular dynamics simulation study on the mechanism of desiccation-induced structuralization of an intrinsically disordered peptide as a model of LEA proteins 7 898
Nobuyuki Matubayasi et al., Biophys. Physicobiol. Vol. 16, 185 (2019) Energetics of cosolvent effect on peptide aggregation 5 995
Katsuhide Yutani et al., Biophys. Physicobiol. Vol. 16, 176 (2019) Confirmation of the formation of salt bridges in the denatured state of CutA1 protein using molecular dynamics simulations 4 626
Mikio Kataoka et al., Biophys. Physicobiol. Vol. 16, 173 (2019) Forewords to the special issue “Progress of theoretical and computational biophysics—in honor of Professor Nobuhiro Go’s outstanding contribution on the occasion of his 80th birthday” 0 584
Kei Shimizu et al., Biophys. Physicobiol. Vol. 16, 167 (2019) Food deprivation changes chemotaxis behavior in Caenorhabditis elegans 7 901
Takeo Yamaguchi et al., Biophys. Physicobiol. Vol. 16, 158 (2019) ATP effects on response of human erythrocyte membrane to high pressure 12 644
Junichi Kaneshiro et al., Biophys. Physicobiol. Vol. 16, 147 (2019) Second harmonic generation polarization microscopy as a tool for protein structure analysis 8 1473
Atsuko Nakanishi et al., Biophys. Physicobiol. Vol. 16, 140 (2019) Cryo-EM studies of the rotary H+-ATPase/synthase from Thermus thermophilus 8 1096
Etsuro Ito et al., Biophys. Physicobiol. Vol. 16, 132 (2019) A novel role of oxytocin: Oxytocin-induced well-being in humans 39 2912
Kei Odai et al., Biophys. Physicobiol. Vol. 16, 127 (2019) Ab-initio study of pyrrole ring deformation in the indole group of 5-HT interacting with water molecules 3 600
Koichi Nakajo, Biophys. Physicobiol. Vol. 16, 121 (2019) Gating modulation of the KCNQ1 channel by KCNE proteins studied by voltage-clamp fluorometry 5 907
Yosuke Tashiro et al., Biophys. Physicobiol. Vol. 16, 114 (2019) Targeted delivery using membrane vesicles in prokaryotes 15 1240
Atsushi Matsumoto, Biophys. Physicobiol. Vol. 16, 108 (2019) Dynamic analysis of ribosome by a movie made from many three-dimensional electron-microscopy density maps 0 826
Hiroshi Koyama et al., Biophys. Physicobiol. Vol. 16, 89 (2019) Biophysics in oviduct: Planar cell polarity, cilia, epithelial fold and tube morphogenesis, egg dynamics 45 1595
Yuhi Hosoe et al., Biophys. Physicobiol. Vol. 16, 80 (2019) Structural and functional properties of Grb2 SH2 dimer in CD28 binding 16 1118
Mika Sakamoto et al., Biophys. Physicobiol. Vol. 16, 68 (2019) Relationship between conformation shift and disease related variation sites in ATP-binding cassette transporter proteins 5 1051
Kenichi Kouyama et al., Biophys. Physicobiol. Vol. 16, 59 (2019) Single-particle analysis of full-length human poly(ADP-ribose) polymerase 1 9 1128
Kunihiko Gekko, Biophys. Physicobiol. Vol. 16, 41 (2019) Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy in structural biology: an overview 14 1615
Shuya Ishii et al., Biophys. Physicobiol. Vol. 16, 28 (2019) Functional significance of HCM mutants of tropomyosin, V95A and D175N, studied with in vitro motility assays 7 1104
Shohei Konno et al., Biophys. Physicobiol. Vol. 16, 18 (2019) Uncovering dehydration in cytochrome c refolding from urea- and guanidine hydrochloride-denatured unfolded state by high pressure spectroscopy 5 1019
Hironobu Nogucci, Biophys. Physicobiol. Vol. 16, 9 (2019) Dynamic and static analyses of glass-like properties of three-dimensional tissues 0 856
Kentaro Ozawa et al., Biophys. Physicobiol. Vol. 16, 1 (2019) Millimeter-sized belt-like pattern formation of actin filaments in solution by interacting with surface myosin in vitro 4 1157
Marzieh Alishahi et al., Biophys. Physicobiol. Vol. 15, 255 (2018) Forced diffusion of water molecules through aquaporin-5 biomembrane; a molecular dynamics study 8 869
Masahiro Nishimura et al., Biophys. Physicobiol. Vol. 15, 251 (2018) Crystallographic analysis of the overlapping dinucleosome as a novel chromatin unit 0 679
Shuji Kawasaki et al., Biophys. Physicobiol. Vol. 15, 235 (2018) Data analytic study of the homothermal maintenance mechanism of Skunk Cabbage: Capturing pre-equilibrium characteristics using extended poisson model 0 800
Takeharu Sekiguchi et al., Biophys. Physicobiol. Vol. 15, 229 (2018) Fluorescent nanodiamonds as a robust temperature sensor inside a single cell 64 2396
Takayoshi Tsubo et al., Biophys. Physicobiol. Vol. 15, 214 (2018) Verification of the effect of the axon fluid as a highly dielectric medium in the high-speed conduction of action potentials using a novel axon equivalent circuit 5 653
Vrushali C. Hingane et al., Biophys. Physicobiol. Vol. 15, 204 (2018) Inhibition of crude viper venom action by silver nanoparticles: A biophysical and biochemical study 11 919
Hiroyuki Kitahata et al., Biophys. Physicobiol. Vol. 15, 196 (2018) Mathematical approach to unpinning of spiral waves anchored to an obstacle with high-frequency pacing 2 624
Kazuhiro Maeshima et al., Biophys. Physicobiol. Vol. 15, 189 (2018) Chromatin as a nuclear spring 27 1239
Keiichi Kojima et al., Biophys. Physicobiol. Vol. 15, 179 (2018) Mutational analysis of the conserved carboxylates of anion channelrhodopsin-2 (ACR2) expressed in Escherichia coli and their roles in anion transport 11 924
Hiroyuki Terashima et al., Biophys. Physicobiol. Vol. 15, 173 (2018) Novel insight into an energy transduction mechanism of the bacterial flagellar type III protein export 3 703
Ryosuke Iwai et al., Biophys. Physicobiol. Vol. 15, 165 (2018) Influence of various parameters in the replica-exchange molecular dynamics method: Number of replicas, replica-exchange frequency, and thermostat coupling time constant 7 995
Tadashi Nakashima et al., Biophys. Physicobiol. Vol. 15, 159 (2018) Earthworm individualities when facing a conflict between turn alternation and aversive learning 6 981
Fumio Oosawa, Biophys. Physicobiol. Vol. 15, 151 (2018) My various thoughts on actin 2 999
Sumita Das et al., Biophys. Physicobiol. Vol. 15, 136 (2018) Single-molecular and ensemble-level oscillations of cyanobacterial circadian clock 5 860
Hitoshi Aonuma et al., Biophys. Physicobiol. Vol. 15, 129 (2018) Comparison of brain monoamine content in three populations of Lymnaea that correlates with taste-aversive learning ability 14 647
Yoshiaki Kinosita et al., Biophys. Physicobiol. Vol. 15, 121 (2018) Cross-kymography analysis to simultaneously quantify the function and morphology of the archaellum 5 769
Hiroyuki Iwamoto, Biophys. Physicobiol. Vol. 15, 111 (2018) Effects of myosin inhibitors on the X-ray diffraction patterns of relaxed and calcium-activated rabbit skeletal muscle fibers 15 787
Masami Ikeda et al., Biophys. Physicobiol. Vol. 15, 104 (2018) SEVENS: a database for comprehensive GPCR genes obtained from genomes 3 1262
Akiko Higuchi et al., Biophys. Physicobiol. Vol. 15, 94 (2018) iMusta4SLC: Database for the structural property and variations of solute carrier transporters 8 954
Miki H. Maeda et al., Biophys. Physicobiol. Vol. 15, 87 (2018) Chemical curation to improve data accuracy: recent development of the 3DMET database 3 628
Kei Yura, Biophys. Physicobiol. Vol. 15, 86 (2018) Preface of Special Issue “Databases” 0 554
Shigeki Mitaku et al., Biophys. Physicobiol. Vol. 15, 75 (2018) Biological meaning of “habitable zone” in nucleotide composition space 4 852
Keisuke Arikawa, Biophys. Physicobiol. Vol. 15, 58 (2018) Theoretical framework for analyzing structural compliance properties of proteins 2 808
Ken H. Nagai, Biophys. Physicobiol. Vol. 15, 51 (2018) Collective motion of rod-shaped self-propelled particles through collision 7 1580
Hiroki Nagashima et al., Biophys. Physicobiol. Vol. 15, 45 (2018) Magnetic structure of manganese cluster in photosystem II investigated by electron paramagnetic resonance 5 920
Mitsuhiko Odera et al., Biophys. Physicobiol. Vol. 15, 33 (2018) Molecular dynamics simulation study on the structural instability of the most common cystic fibrosis-associated mutant ΔF508-CFTR 14 1298
Takashi Fujii et al., Biophys. Physicobiol. Vol. 15, 28 (2018) Evidence for the hook supercoiling mechanism of the bacterial flagellum 12 999
Ryuma Sato et al., Biophys. Physicobiol. Vol. 15, 18 (2018) The binding structure and affinity of photodamaged duplex DNA with members of the photolyase/cryptochrome family: A computational study 6 841
Yoichi Nakatani et al., Biophys. Physicobiol. Vol. 15, 8 (2018) Quantitative analyses of the equilibria among DNA complexes of a blue-light-regulated bZIP module, Photozipper 5 796
Akira Kitamura et al., Biophys. Physicobiol. Vol. 15, 1 (2018) Determination of diffusion coefficients in live cells using fluorescence recovery after photobleaching with wide-field fluorescence microscopy 23 1514
Daisuke Miyashiro et al., Biophys. Physicobiol. Vol. 14, 207 (2017) Radial stiffness characteristics of the overlap regions of sarcomeres in isolated skeletal myofibrils in pre-force generating state 4 732
Hiroshi Hashimoto et al., Biophys. Physicobiol. Vol. 14, 199 (2017) Structural basis for the molecular interactions in DNA damage tolerances 3 686
Hiroyuki Terashima et al., Biophys. Physicobiol. Vol. 14, 191 (2017) Structural differences in the bacterial flagellar motor among bacterial species 47 1549
Kazuho Yoshida et al., Biophys. Physicobiol. Vol. 14, 183 (2017) Chimeric microbial rhodopsins for optical activation of Gs-proteins 4 714
Shota Kondo et al., Biophys. Physicobiol. Vol. 14, 173 (2017) Analysis of the GTPase motif of FlhF in the control of the number and location of polar flagella in Vibrio alginolyticus 15 660
Naoki Arai et al., Biophys. Physicobiol. Vol. 14, 161 (2017) Analysis of an ATP-induced conformational transition of ABC transporter MsbA using a coarse-grained model 2 693
Eiji Yamamoto, Biophys. Physicobiol. Vol. 14, 153 (2017) Computational and theoretical approaches for studies of a lipid recognition protein on biological membranes  3 942
Toshifumi Kumai, Biophys. Physicobiol. Vol. 14, 147 (2017) Isn’t there an inductance factor in the plasma membrane of nerves?  8 725
Ayumi Hashimoto et al., Biophys. Physicobiol. Vol. 14, 137 (2017) The change of picrotoxin-induced epileptiform discharges to the beta oscillation by carbachol in rat hippocampal slices 10 848
Mikihiro Shibata et al., Biophys. Physicobiol. Vol. 14, 127 (2017) High-speed atomic force microscopy imaging of live mammalian cells  41 1891
Hiroaki Machiyama et al., Biophys. Physicobiol. Vol. 14, 119 (2017) The use of a genetically encoded molecular crowding sensor in various biological phenomena  12 1246
Yutaro Yamada et al., Biophys. Physicobiol. Vol. 14, 111 (2017) Demonstration of correlative atomic force and transmission electron microscopy using actin cytoskeleton  3 1238
Akira R. Kinjo, Biophys. Physicobiol. Vol. 14, 99 (2017) Monte Carlo simulation of a statistical mechanical model of multiple protein sequence alignment  3 855
Souhei Sakata et al., Biophys. Physicobiol. Vol. 14, 85 (2017) Domain-to-domain coupling in voltage-sensing phosphatase  5 1053
Ryo Yoshizawa et al., Biophys. Physicobiol. Vol. 14, 75 (2017) Single-molecule fluorescence imaging of RalGDS on cell surfaces during signal transduction from Ras to Ral  17 1002
Kotomi Shibata et al., Biophys. Physicobiol. Vol. 14, 67 (2017) Mutations in the SH1 helix alter the thermal properties of myosin II  0 834
Yumeka Yamauchi et al., Biophys. Physicobiol. Vol. 14, 57 (2017) Molecular properties of a DTD channelrhodopsin from Guillardia theta  38 1301
Jun Tamogami et al., Biophys. Physicobiol. Vol. 14, 49 (2017) Existence of two O-like intermediates in the photocycle of Acetabularia rhodopsin II, a light-driven proton pump from a marine alga   6 872
Noriyo Mitome et al., Biophys. Physicobiol. Vol. 14, 41 (2017) Identification of aqueous access residues of the sodium half channel in transmembrane helix 5 of the Fo-a subunit of Propionigenium modestum ATP synthase   4 986
Yohei Murakami et al., Biophys. Physicobiol. Vol. 14, 29 (2017) Model-based control of the temporal patterns of intracellular signaling in silico  2 914
Kazuki Takahashi et al., Biophys. Physicobiol. Vol. 14, 23 (2017) Enhanced mRNA-protein fusion efficiency of a single-domain antibody by selection of mRNA display with additional random sequences in the terminal translated regions  6 1138
Alemeh Zamani et al., Biophys. Physicobiol. Vol. 14, 13 (2017) Kinetic characteristics of chimeric channelrhodopsins implicate the molecular identity involved in desensitization  7 990
Kazuya Suzuki et al., Biophys. Physicobiol. Vol. 14, 1 (2017) Mechanical properties of spindle poles are symmetrically balanced  0 947
Keitaro Shibata et al., Biophys. Physicobiol. Vol. 13, 321 (2016) Actin binding domain of filamin distinguishes posterior from anterior actin filaments in migrating Dictyostelium cells  7 913
Ryuma Sato et al., Biophys. Physicobiol. Vol. 13, 311 (2016) Theoretical analyses on a flipping mechanism of UV-induced DNA damage  9 869
Shigeki Mitaku et al., Biophys. Physicobiol. Vol. 13, 305 (2016) What parameters characterize “life”?  4 711
Motonori Ota et al., Biophys. Physicobiol. Vol. 13, 295 (2016) Itinerary profiling to analyze a large number of protein-folding trajectories  3 712
Masaki Sasai et al., Biophys. Physicobiol. Vol. 13, 281 (2016) Cooperativity and modularity in protein folding  6 1079
Hiroshi Wako et al., Biophys. Physicobiol. Vol. 13, 263 (2016) Characterization of protein folding by a Φ-value calculation with a statistical-mechanical model  3 942
Yukio Kobayashi, Biophys. Physicobiol. Vol. 13, 251 (2016) Statistical mechanics of protein structural transitions: Insights from the island model  3 833
Mitiko Go, Biophys. Physicobiol. Vol. 13, 249 (2016) Professor Nobuhiko Saitô’s contribution to statistical mechanics of biopolymers 1 568
Kei Yura, Biophys. Physicobiol. Vol. 13, 245 (2016) Obituary: Nobuhiko Saitô, a man who understood protein folding in his own way 2 685
Kei Yura et al., Biophys. Physicobiol. Vol. 13, 243 (2016) Memorial Issue for Professor Nobuhiko Saitô  0 574
Yoshihiko Furuike et al., Biophys. Physicobiol. Vol. 13, 235 (2016) Accelerating in vitro studies on circadian clock systems using an automated sampling device  14 930
Yasuhiro Onoue, et al., Biophys. Physicobiol. Vol. 13, 227 (2016) Domain-based biophysical characterization of the structural and thermal stability of FliG, an essential rotor component of the Na+-driven flagellar motor  5 785
Koutaro Nakagome et al., Biophys. Physicobiol. Vol. 13, 217 (2016) Model simulation of the SPOC wave in a bundle of striated myofibrils  10 793
Kota Kasahara et al., Biophys. Physicobiol. Vol. 13, 209 (2016) myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic scheme  30 1261
Oanh T. P. Kim, Biophys. Physicobiol. Vol. 13, 207 (2016) Erratum: In silico studies for the interaction of tumor necrosis factor-alpha (TNF-α) with different saponins from Vietnamese ginseng (Panax vietnamesis) [Biophysics and Physicobiology, Vol.13, pp.173-180 (2016)]  0 424
Masaaki Kotera et al., Biophys. Physicobiol. Vol. 13, 195 (2016) Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis  16 1396
Takako Sakano et al., Biophys. Physicobiol. Vol. 13, 181 (2016) Molecular dynamics analysis to evaluate docking pose prediction  57 1702
Oanh T. P. Kim et al., Biophys. Physicobiol. Vol. 13, 173 (2016) In silico studies for the interaction of tumor necrosis factor-alpha (TNF-α) with different saponins from Vietnamese ginseng (Panax vietnamesis)  32 1404
Hiroo Imai et al., Biophys. Physicobiol. Vol. 13, 165 (2016) Amino acid residues of bitter taste receptor TAS2R16 that determine sensitivity in primates to β-glycosides  8 1128
Kazunori D et al., Biophys. Physicobiol. Vol. 13, 157 (2016) Structural characterization of single nucleotide variants at ligand binding sites and enzyme active sites of human proteins  7 889
Tatsuya Okuno et al., Biophys. Physicobiol. Vol. 13, 149 (2016) Importance of consensus region of multiple-ligand templates in a virtual screening method  3 670
Tsukasa Nakamura et al., Biophys. Physicobiol. Vol. 13, 139 (2016) Effects of the difference in similarity measures on the comparison of ligand-binding pockets using a reduced vector representation of pockets  3 750
Masayuki Oda et al., Biophys. Physicobiol. Vol. 13, 135 (2016) Effects of substrate conformational strain on binding kinetics of catalytic antibodies  2 724
Yuka Suzuki et al., Biophys. Physicobiol. Vol. 13, 127 (2016) Conformational shift in the closed state of GroEL induced by ATP-binding triggers a transition to the open state  4 881
Junko Taguchi et al., Biophys. Physicobiol. Vol. 13, 117 (2016) Dynamic profile analysis to characterize dynamics-driven allosteric sites in enzymes  7 720
Nobuyuki Uchikoga et al., Biophys. Physicobiol. Vol. 13, 105 (2016) Specificity of broad protein interaction surfaces for proteins with multiple binding partners  5 845
Georgios Iakovou et al., Biophys. Physicobiol. Vol. 13, 97 (2016) Determination of locked interfaces in biomolecular complexes using Haptimol_RD 6 746
Kentaro Ishii et al., Biophys. Physicobiol. Vol. 13, 87 (2016) Mass spectrometric analysis of protein–ligand interactions 38 1686
Kei Yura, Biophys. Physicobiol. Vol. 13, 85 (2016) Preface of Special Issue “Protein-Ligand Interactions”  2 680
Wataru Tanaka et al., Biophys. Physicobiol. Vol. 13, 77 (2016) Molecular mechanisms of substrate specificities of uridine-cytidine kinase  10 897
Akihiro Okamoto et al., Biophys. Physicobiol. Vol. 13, 71 (2016) Cation-limited kinetic model for microbial extracellular electron transport via an outer membrane cytochrome C complex  13 1495
Ryo Iizuka et al., Biophys. Physicobiol. Vol. 13, 63 (2016) Chaperonin GroEL uses asymmetric and symmetric reaction cycles in response to the concentration of non-native substrate proteins  6 1172
Akira R. Kinjo, Biophys. Physicobiol. Vol. 13, 45 (2016) A unified statistical model of protein multiple sequence alignment integrating direct coupling and insertions  5 1010
Ichiro Yamato et al., Biophys. Physicobiol. Vol. 13, 37 (2016) Operating principles of rotary molecular motors: differences between F1 and V1 motors  8 1020
Yu Takano et al., Biophys. Physicobiol. Vol. 13, 27 (2016) Density functional study of molecular interactions in secondary structures of proteins  19 994
Hitomi Komatsu et al., Biophys. Physicobiol. Vol. 13, 13 (2016) Genetic analysis of revertants isolated from the rod-fragile fliF mutant of Salmonella  10 1383
Yuki Nakamura et al., Biophys. Physicobiol. Vol. 13, 1 (2016) Switching of the positive feedback for RAS activation by a concerted function of SOS membrane association domains  10 1377
Tatsuhito Matsuo et al., Biophys. Physicobiol. Vol. 12, 145 (2015) Structures of the troponin core domain containing the cardiomyopathy-causing mutants studied by small-angle X-ray scattering  11 850
Daichi Yamada et al., Biophys. Physicobiol. Vol. 12, 139 (2015) Structural role of two histidines in the (6-4) photolyase reaction  8 901
Go Watanabe et al., Biophys. Physicobiol. Vol. 12, 131 (2015) Analysis of water channels by molecular dynamics simulation of heterotetrameric sarcosine oxidase  4 913
Marie Kurihara et al., Biophys. Physicobiol. Vol. 12, 121 (2015) Microbial rhodopsins: wide distribution, rich diversity and great potential  37 1471
Akira R. Kinjo, Biophys. Physicobiol. Vol. 12, 117 (2015) Liquid-theory analogy of direct-coupling analysis of multiple-sequence alignment and its implications for protein structure prediction  1 728
Saki Aoto et al., Biophys. Physicobiol. Vol. 12, 103 (2015) Case study on the evolution of hetero-oligomer interfaces based on the differences in paralogous proteins  2 846
Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 12, 87 (2015) Rotational motion of rhodamine 6G tethered to actin through oligo(ethylene glycol) linkers studied by frequency-domain fluorescence anisotropy  2 1012
Mika Morikawa et al., Biophys. Physicobiol. Vol. 12, 79 (2015) Subattomole detection of adiponectin in urine by ultrasensitive ELISA coupled with thio-NAD cycling  18 1026
Yuki Yanagisawa et al., Biophys. Physicobiol. Vol. 12, 69 (2015) Time-resolved chemiluminescence of firefly luciferin generated by dissolving oxygen in deoxygenated dimethyl sulfoxide containing potassium tert-butoxide 0 737
Takayoshi Tomono et al., Biophys. Physicobiol. Vol. 12, 57 (2015) Investigation of glycan evolution based on a comprehensive analysis of glycosyltransferases using phylogenetic profiling  6 1071
Eiji Kanamori et al., Biophys. Physicobiol. Vol. 12, 47 (2015) Structural comparison between the open and closed forms of citrate synthase from Thermus thermophilus HB8  7 1006
Yuji Furutani et al., Biophys. Physicobiol. Vol. 12, 37 (2015) Specific interactions between alkali metal cations and the KcsA channel studied using ATR-FTIR spectroscopy  13 1041
Takumi Koshiba, Biophys. Physicobiol. Vol. 12, 31 (2015) Protein-protein interactions of mitochondrial-associated protein via bioluminescence resonance energy transfer  1 793
Hitomi Nakashima et al., Biophys. Physicobiol. Vol. 12, 21 (2015) The molecular dynamics of crawling migration in microtubule-disrupted keratocytes  4 899
Satoru Okuda et al., Biophys. Physicobiol. Vol. 12, 13 (2015) Three-dimensional vertex model for simulating multicellular morphogenesis  50 2661
Koji Oda et al., Biophys. Physicobiol. Vol. 12, 1 (2015) Physicochemical origin of high correlation between thermal stability of a protein and its packing efficiency: a theoretical study for staphylococcal nuclease mutants 14 1102
Saeko Yanaka et al., Biophys. Vol. 11, 103 (2015) Revealing the peptide presenting process of human leukocyte antigen through the analysis of fluctuation  0 2263
Fumihiro Motojima, Biophys. Vol. 11, 93 (2015) How do chaperonins fold protein?  14 2717
Masashi K. Kajita et al., Biophys. Vol. 11, 85 (2015) Experimental and theoretical bases for mechanisms of antigen discrimination by T cells 2 2882
Mukaiyama et al., Biophys. Vol. 11, 79 (2015) A protocol for preparing nucleotide-free KaiC monomer  4 2470
Watanabe et al., Biophys. Vol. 11, 73 (2015) A new antigenic marker specifically labels a subpopulation of the class II Kenyon cells in the brain of the European honeybee Apis mellifera  0 2447
Fujii et al., Biophys. Vol. 11, 67 (2015) In vitro directed evolution of alpha-hemolysin by liposome display 5 4525
Katayama et al., Biophys. Vol. 11, 61 (2015) FTIR study of primate color visual pigments 5 2371
Dyakonova et al., Biophys. Vol. 11, 55 (2015) The activity of isolated snail neurons controlling locomotion is affected by glucose 22 2542
Ikezaki et al., Biophys. Vol. 11, 47 (2015) Lever arm extension of myosin VI is unnecessary for the adjacent binding state  1 2595
Wijaya, et al., Biophys. Vol. 11, 39 (2015) FTIR study of CPD photolyase with substrate in single strand DNA 10 2814
Ito et al., Biophys. Vol. 11, 33 (2015) Thermodynamic implications of high Q10 of thermoTRP channels in living cells 36 3186
Hsu et al., Biophys. Vol. 11, 25 (2015) Role of TRP channels in the induction of heat shock proteins (Hsps) by heating skin  19 3460
 Ho et al., Biophys. Vol. 11, 17 (2015) TRP channels in skin: from physiological implications to clinical significances 44 4963
 Lin et al., Biophys. Vol. 11, 9 (2015) Electrophysiological characteristics of IB4-negative TRPV1-expressing muscle afferent DRG neurons  6 2719
Ito, Biophys. Vol. 11, 7 (2015) Preface of Special Issue “TRP channels: their functional roles in medical sciences”  0 1251
Yamagishi et al., Biophys. Vol. 11, 1 (2015) Effects of serotonin on the heartbeat of pond snails in a hunger state 12 3042
Hiroshi Sunada et al., Biophys. Vol. 10, 121 (2014) Electrophysiological characteristics of feeding-related neurons after taste avoidance Pavlovian conditioning in Lymnaea stagnalis  13 971
Hideki Itoh et al., Biophys. Vol. 10, 109 (2014) Microscopic heat pulse-induced calcium dynamics in single WI-38 fibroblasts 23 1185
Ken Nishikawa et al., Biophys. Vol. 10, 99 (2014) Cooperation between phenotypic plasticity and genetic mutations can account for the cumulative selection in evolution 9 1151
Nishikawa et al., Biophys. Vol. 10, 89 (2014) 3-D structural analysis of the crucial intermediate of skeletal muscle myosin and its role in revised actomyosin cross-bridge cycle 3 902
Takigami et al., Biophys. Vol. 10, 77 (2014) Morphological and physiological characteristics of dermal photoreceptors in Lymnaea stagnalis  5 1243
Fujita et al., Biophys. Vol. 10, 69 (2014) Myosin V is a biological Brownian machine  0 1206
Hashimoto, Biophys. Vol. 10, 63 (2014) Structural and mutation studies of two DNA demethylation related glycosylases: MBD4 and TDG  6 1077
Sharma et al., Biophys. Vol. 10, 55 (2014) Familial clustering of mice consistent to known pedigrees enabled by the genome profiling (GP) method  3 964
Watabe et al., Biophys. Vol. 10, 49 (2014) Ultrasensitive enzyme-linked immunosorbent assay (ELISA) of proteins by combination with the thio-NAD cycling method 39 2077
Fujiwara et al., Biophys. Vol. 10, 43 (2014) Reconstitution of intracellular environments in vitro and in artificial cells 14 4112
Nakamura et al., Biophys. Vol. 10, 35 (2014) Effect of the MotB(D33N) mutation on stator assembly and rotation of the proton-driven bacterial flagellar motor 5 1095
Fujisawa et al., Biophys. Vol. 10, 25 (2014) Uncovering the mechanism for selective control of the visible and near-IR absorption bands in bacteriochlorophylls a, b and g  1 1053
Arai et al., Biophys. Vol. 10, 15 (2014) Optimal terminal sequences for continuous or serial isothermal amplification of dsRNA with norovirus RNA replicase  1 1135
Qin et al., Biophys. Vol. 10, 9 (2014) α-helix formation rate of oligopeptides at subzero temperatures  1 1060
Yamazaki et al., Biophys. Vol. 10, 1 (2014) Mapping of the local environmental changes in proteins by cysteine scanning  6 1400
Yoshioka et al., Biophys. Vol. 9, 183 (2013) Physical aspects of sensory transduction on seeing, hearing and smelling  8 1377
Castillo et al., Biophys. Vol. 9, 173 (2013) The C-terminal periplasmic domain of MotB is responsible for load-dependent control of the number of stators of the bacterial flagellar motor  31 1353
Fukuda et al., Biophys. Vol. 9, 167 (2013) Detection of a protein-bound water vibration of halorhodopsin in aqueous solution  7 774
Otsuka et al., Biophys. Vol. 9, 161 (2013) Increase in cyclic AMP concentration in a cerebral giant interneuron mimics part of a memory trace for conditioned taste aversion of the pond snail  17 709
Aoki et al., Biophys. Vol. 9, 149 (2013) Single molecule FRET observation of kinesin-1's head-tail interaction on microtubule  7 1136
Ishikawa, Biophys. Vol. 9, 141 (2013) 3D structure of eukaryotic flagella/cilia by cryo-electron tomography  3 1071
Kobayashi et al., Biophys. Vol. 9, 131 (2013) Recent structural studies on Dom34/aPelota and Hbs1/aEF1α: important factors for solving general problems of ribosomal stall in translation  6 780
Furutani et al., Biophys. Vol. 9, 123 (2013) Development of a rapid Buffer-exchange system for time-resolved ATR-FTIR spectroscopy with the step-scan mode  9 1083
Kawabata et al., Biophys. Vol. 9, 113 (2013) LigandBox: A database for 3D structures of chemical compounds  28 1821
Toyabe et al., Biophys. Vol. 9, 107 (2013) Information-to-free-energy conversion: Utilizing thermal fluctuations  3 1524
Matsuo et al., Biophys. Vol. 9, 99 (2013) Difference in hydration structures between F-actin and myosin subfragment-1 detected by small-angle X-ray and neutron scattering  9 1029
Toyabe et al., Biophys. Vol. 9, 91 (2013) Experimental thermodynamics of single molecular motor  14 1409
Nagata et al., Biophys. Vol. 9, 85 (2013) Contribution of a visual pigment absorption spectrum to a visual function: depth perception in a jumping spider  1 1188
Tomisawa et al., Biophys. Vol. 9, 79 (2013) A new approach to detect small peptides clearly and sensitively by Western blotting using a vacuum-assisted detection method  12 1198
Itabashi et al., Biophys. Vol. 9, 73 (2013) Responses of chromosome segregation machinery to mechanical perturbations 2 903
Moriya et al., Biophys. Vol. 9, 63 (2013) Role of the Dc domain of the bacterial hook protein FlgE in hook assembly and function  13 893
Kato et al., Biophys. Vol. 9, 57 (2013) Crystal structure of channelrhodopsin, a light-gated cation channel - all cations lead through the monomer -  8 952
Watanabe, Biophys. Vol. 9, 51 (2013) Rotary catalysis of FoF1-ATP synthase  5 1052
Kinoshita et al., Biophys. Vol. 9, 37 (2013) Characterization of the ordered phase formed by sphingomyelin analogues and cholesterol binary mixtures  13 1204
Nakamura et al., Biophys. Vol. 9, 31 (2013) Mechanism of the nucleotidyl-transfer reaction in DNA polymerase revealed by time-resolved protein crystallography  8 1174
Yoshizumi et al., Biophys. Vol. 9, 21 (2013) Expression, purification and biochemical characterization of the cytoplasmic loop of PomA, a stator component of the Na+ driven flagellar motor  2 876
Maruta et al., Biophys. Vol. 9, 13 (2013) Single turnovers of fluorescent ATP bound to bipolar myosin filament during actin filaments sliding  2 946
Kobayashi et al., Biophys. Vol. 9, 1 (2013) Distinct Conformation of ATP Molecule in Solution and on Protein  19 1816
Nishimura et al., Biophys. Vol. 8, 173 (2012) Phase dependency of long-term potentiation induction during the intermittent bursts of carbachol-induced β oscillation in rat hippocampal slices  1 723
Yoshida, Biophys. Vol. 8, 163 (2012) Self-oscillating gels beating like a heart muscle  16 1471
Mitsui et al., Biophys. Vol. 8, 151 (2012) Proposed model for the flagellar rotary motor with shear stress transmission  0 872
Koyama et al., Biophys. Vol. 8, 145 (2012) Mechanistic insights from the recent structures of the CRM1 nuclear export complex and its disassembly intermediate  7 889
Higo et al., Biophys. Vol. 8, 139 (2012) Virtual states introduced for overcoming entropic barriers in conformational space  10 746
Du et al., Biophys. Vol. 8, 127 (2012) A scoring function based on solvation thermodynamics for protein structure prediction  1 1382
Hayashi et al., Biophys. Vol. 8, 115 (2012) Full-Quantum chemical calculation of the absorption maximum of bacteriorhodopsin: a comprehensive analysis of the amino acid residues contributing to the opsin shift  5 1335
Hayashi et al., Biophys. Vol. 8, 111 (2012) Extraction and purification of a luminiferous substance from the luminous mushroom Mycena chlorophos  11 1391
Eugene et al., Biophys. Vol. 8, 103 (2012) Comparative study of the different mechanisms for zinc ion stress sensing in two cyanobacterial strains, Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803  5 825
Mizuno et al., Biophys. Vol. 8, 95 (2012) mDia1 and formins: screw cap of the actin filament  10 971
Kinjo et al., Biophys. Vol. 8, 79 (2012) GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution  4 944
Watanabe et al., Biophys. Vol. 8, 73 (2012) Chemomechanical coupling of F1-ATPase under hydrolysis conditions  2 813
Hayashi et al., Biophys. Vol. 8, 67 (2012) Measurements of the driving forces of bio-motors using the fluctuation theorem 11 1422
Fukuoka et al., Biophys. Vol. 8, 59 (2012) Coordinated regulation of multiple flagellar motors by the Escherichia coli chemotaxis system 6 1300
Taniguchi et al., Biophys. Vol. 8, 51 (2012) Mechanical unfolding studies of protein molecules 5 1327
Murakami et al., Biophys. Vol. 8, 41 (2012) Rigor of cell fate decision by variable p53 pulses and roles of cooperative gene expression by p53  3 972
Mitsui et al., Biophys. Vol. 8, 27 (2012) Theory of muscle contraction mechanism with ­cooperative interaction among crossbridges 7 1518
Jia et al., Biophys. Vol. 8, 21 (2012) Flow birefringence property of desmin filaments 0 758
Kamiguri et al., Biophys. Vol. 8, 11 (2012) Contraction behaviors of Vorticella sp. stalk investigated using high-speed video camera. II: Viscosity effect of several types of polymer additives 3 991
Kamiguri et al., Biophys. Vol. 8, 1 (2012) Contraction behaviors of Vorticella sp. stalk investigated using high-speed video camera. I: Nucleation and growth model 4 1174
Tsukazaki  et al., Biophys. Vol. 7, 129 (2011) The mechanism of protein export enhancement by the SecDF membrane component 5 976
Miyakawa et al., Biophys. Vol. 7, 123 (2011) Regulatory mechanism of abscisic acid signaling 12 1198
Yoshidome, Biophys. Vol. 7, 113 (2011) Importance of water entropy in rotation mechanism of F1-ATPase 1 1053
Yoshii et al., Biophys. Vol. 7, 105 (2011) Kinetics of binding and diffusivity of leucine-enkephalin in large unilamellar vesicle by pulsed-field-gradient 1H NMR in situ 6 839
Gerle, Biophys. Vol. 7, 99 (2011) Stabilization of Fo/Vo/Ao by a radial electric field 2 845
Iwata et al., Biophys. Vol. 7, 89 (2011) Light-induced structural changes of the LOV2 domains in various phototropins revealed by FTIR spectroscopy 1 976
Sugawara et al., Biophys. Vol. 7, 77 (2011) Chemophoresis as a driving force for intracellular organization: Theory and application to plasmid partitioning 36 1414
Mizuno et al., Biophys. Vol. 7, 69 (2011) Staurosporine induces lamellipodial widening in locomoting fish keratocytes by abolishing the gradient from radial extension of leading edge 4 828
Koike et al., Biophys. Vol. 7, 59 (2011) Characterization of the flagellar motor composed of functional GFP-fusion derivatives of FliG in the Na+-driven polar flagellum of Vibrio alginolyticus 3 952
Sudo et al., Biophys. Vol. 7, 51 (2011) Functional expression of a two-transmembrane HtrII protein using cell-free synthesi 0 1129
Kitagawa et al., Biophys. Vol. 7, 35 (2011) Roles of the C-terminal residues of calmodulin in structure and function 5 1075
Jia  et al., Biophys. Vol. 7, 29 (2011) Limited digestion of α-actinin in the presence of F-actin 0 829
Iwamoto, Biophys. Vol. 7, 21 (2011) Structure, function and evolution of insect flight muscle 50 2725
Honda et al., Biophys. Vol. 7, 11 (2011) Two-dimensional periodic texture of actin filaments formed upon drying 2 1089
Shiba et al., Biophys. Vol. 7, 1 (2011) Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase 4 1447
Watanabe et al., Biophys. Vol. 6, 67 (2010) Molecular mechanism of long-range synergetic color tuning between multiple amino acid residues in conger rhodopsin 13 1109
Haruyama et al., Biophys. Vol. 6, 59 (2010) Inhibition of thermophilic F1-ATPase by the ε subunit takes different path from the ADP-Mg inhibition 10 1265
Sakata et al., Biophys. Vol. 6, 53 (2010) Estimation for diameter of superparamagnetic particles in Daphnia resting eggs 1 729
Kitagawa et al., Biophys. Vol. 6, 37 (2010) Modeling of the gap junction of pancreatic β-cells and the robustness of insulin secretion 5 992
Nishikata et al., Biophys. Vol. 6, 27 (2010) Molecular modeling of the HAMP domain of sensory rhodopsin II transducer from Natronomonas pharaonis 3 1143
Matsuo et al., Biophys. Vol. 6, 13 (2010) X-ray fiber diffraction modeling of structural changes of the thin filament upon activation of live vertebrate skeletal muscles 7 1312
Sato et al., Biophys. Vol. 6, 1 (2010) Actin oligomers at the initial stage of polymerization induced by increasing temperature at low ionic strength: Study with small-angle X-ray scattering 8 1457
Suda et al., Biophys. Vol. 5, 59 (2009) Analyzing observed or hidden heterogeneity on survival and mortality in an isogenic C. elegans cohort 7 771
Nishikawa, Biophys. Vol. 5, 53 (2009) Natively unfolded proteins: An overview 19 1210
Sudo et al., Biophys. Vol. 5, 45 (2009) Comparative study of the ion flux pathway in stator units of proton- and sodium-driven flagellar motors 21 1320
Kinjo, Biophys. Vol. 5, 37 (2009) Profile conditional random fields for modeling protein families with structural information 3 1052
Fukagawa et al., Biophys. Vol. 5, 25 (2009) Stochastic emergence of multiple intermediates detected by single-molecule quasi-static mechanical unfolding of protein 1 962
Majima, Biophys. Vol. 5, 11 (2009) Load-dependent sliding direction change of a myosin head on an actin molecule and its energetic aspects: Energy borrowing model of a cross-bridge cycle 0 874
Maeno et al., Biophys. Vol. 5, 1 (2009) The pressure-temperature phase diagram of hen lysozyme at low pH 21 1808
Akasaka et al., Biophys. Vol. 4, 29 (2008) Pressure acceleration of proteolysis: A general mechanism 19 1075
Nishioka et al., Biophys. Vol. 4, 19 (2008) Correlation between square of electron tunneling matrix element and donor-acceptor distance in fluctuating protein media 2 983
Taniguchi et al., Biophys. Vol. 4, 11 (2008) The forward and backward stepping processes of kinesin are gated by ATP binding 2 826
Kinoshita et al., Biophys. Vol. 4, 1 (2008) Intermolecular interaction of phosphatidylinositol with the lipid raft molecules sphingomyelin and cholesterol 5 1169
Kinjo et al., Biophys. Vol. 3, 75 (2007) Similarity search for local protein structures at atomic resolution by exploiting a database management system 19 1240
Miyauchi et al., Biophys. Vol. 3, 63 (2007) Rho small GTPase regulates the stability of individual focal adhesions: a FRET-based visualization of GDP/GTP exchange on small GTPases 3 928
Irisa et al., Biophys. Vol. 3, 57 (2007) Stereoscopic viewing system for proteins using OpenRasmol: a tool for displaying a filament of proteins 0 759
Suzuki et al., Biophys. Vol. 3, 47 (2007) Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide 2 687
Sawada et al., Biophys. Vol. 3, 37 (2007) Ratio of membrane proteins in total proteomes of prokaryota 12 835
Patil et al., Biophys. Vol. 3, 27 (2007) The role of charged surface residues in the binding ability of small hubs in protein-protein interaction networks 9 883
Fukuhara et al., Biophys. Vol. 3, 13 (2007) Prediction of interacting proteins from homology-modeled complex structures using sequence and structure scores 5 1386
Shinoda et al., Biophys. Vol. 3, 1 (2007) Retention of local conformational compactness in unfolding of barnase; Contribution of end-to-end interactions within quasi-modules 3 1014
Suzuki et al., Biophys. Vol. 2, 63 (2006) Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations 6 977
Fuchino et al., Biophys. Vol. 2, 57 (2006) Photochemical and photophysical properties of carotenoid immobilized on a surfactant micellar medium including chlorophyll as an artificial photosynthesis system 5 983
Yahata et al., Biophys. Vol. 2, 45 (2006) Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F 1 1192
Danev et al., Biophys. Vol. 2, 35 (2006) Applicability of thin film phase plates in biological electron microscopy 15 1122
Iwaoka et al., Biophys. Vol. 2, 23 (2006) Possible roles of S···O and S···N interactions in the functions and evolution of phospholipase A2 20 983
Nara et al., Biophys. Vol. 2, 13 (2006) Processivity of kinesin motility is enhanced on increasing temperature 10 1008
Watanabe et al., Biophys. Vol. 2, 1 (2006) Generation of a flexible loop structural ensemble and its application to induced-fit structural changes following ligand binding 6 1011
Kinjo et al., Biophys. Vol. 1, 67 (2005) Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks 14 1333
Imai et al., Biophys. Vol. 1, 55 (2005) Mechanisms of secondary structure breakers in soluble proteins 82 1457
Noda et al., Biophys. Vol. 1, 45 (2005) Fluctuation of actin sliding over myosin thick filamets in vitro 5 832
Metsugi et al., Biophys. Vol. 1, 33 (2005) Sequence analysis of the gliding protein Gli349 in Mycoplasma mobile 31 1158
Furusawa et al., Biophys. Vol. 1, 25 (2005) Ubiquity of log-normal distributions in intra-cellular reaction dynamics 122 2203
Patil et al., Biophys. Vol. 1, 21 (2005) HINT: a database of annotated protein-protein interactions and their homologs 31 919
Kitamura et al., Biophys. Vol. 1, 1 (2005) Mechanism of muscle contraction based on stochastic properties of single actomyosin motors observed in vitro 37 1725

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