| Haruyuki Fukuzawa et al., Biophys. Physicobiol. Vol. 23, e230003
(2026) |
Development of electromagnetic tweezers for single-molecule energetics of
kinesin |
0 |
0 |
| Masahiko Imashimizu et al., Biophys. Physicobiol. Vol. 23,
e230002 (2026) |
High-sensitivity method for detecting dielectric changes in water driven
by biomolecular hydration |
0 |
20 |
| Atsuki Hishida et al., Biophys. Physicobiol. Vol. 23, e230001
(2026) |
Analysis of metabolic stability under environmental perturbations using a
kinetic model |
0 |
19 |
| Jiyeon Han, Biophys. Physicobiol. Vol. 22, e221006 (2025) |
From coordination to function: Inorganic insights into metalloproteins and
metallopeptides in biosystems |
0 |
49 |
| Takayuki Nishizaka, Biophys. Physicobiol. Vol. 22, e221005
(2025) |
Brief history of international joint symposiums in BSJ |
0 |
39 |
| Chihong Song, Biophys. Physicobiol. Vol. 22, e221004 (2025) |
The future of Asian biophysics built through Korea–Japan collaboration |
0 |
70 |
| Katsumi Maenaka, Biophys. Physicobiol. Vol. 22, e221003 (2025) |
Japan–Korea collaboration on biophysical techniques for drug discovery in
infectious diseases: Toward future pandemic preparedness |
0 |
51 |
| Jae-Hyun Park, Biophys. Physicobiol. Vol. 22, e221002 (2025) |
Korea-Japan Biophysics Collaboration: A journey through microbial
rhodopsin research |
0 |
49 |
| Sam-Yong Park et al., Biophys. Physicobiol. Vol. 22, e221001
(2025) |
Towards the International Conference on Biophysics and Biomedical
Sciences: ICBBS 2026 |
0 |
18 |
| Anne-Idil Farah et al., Biophys. Physicobiol. Vol. 22, e220033
(2025) |
Molecular dynamics simulations of amyloid-β(29–42) aggregation in bulk
water and at the air–water interface |
0 |
79 |
| Ritsu Mizutori et al., Biophys. Physicobiol. Vol. 22, e220032
(2025) |
Protonation states of highly conserved carboxylic acids in NeoR |
0 |
143 |
| Lin Zhang et al., Biophys. Physicobiol. Vol. 22, e220031 (2025) |
Physicochemical, functional, and evolutionary characteristics of protein
loop regions in human and Escherichia coli proteomes |
0 |
65 |
| Yosuke Mizuno et al., Biophys. Physicobiol. Vol. 22, e220030
(2025) |
Schiff base deprotonation and structural changes in a mouse UV-sensitive
cone visual pigment revealed by FTIR spectroscopy at 77 K |
0 |
165 |
| Mako Aoyama et al., Biophys. Physicobiol. Vol. 22, e220029
(2025) |
FTIR study of the wild-type and mutant proteins of a viral rhodopsin,
OLPVR1 |
0 |
166 |
| Jiro Kakizaki et al., Biophys. Physicobiol. Vol. 22, e220028
(2025) |
Selection–diversification interplay in oligonucleotide chemical evolution |
0 |
383 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 22, e220027 (2025) |
Editorial: Announcement of BPPB paper awards 2025 |
0 |
161 |
| Anton Schwarz et al., Biophys. Physicobiol. Vol. 22, e220026
(2025) |
Fractal dimensions for tumour-related cell types of prostate cancer on
histopathology images using multiple-threshold box counting algorithm |
0 |
209 |
| Hotaka Kobayashi et al., Biophys. Physicobiol. Vol. 22, e220025
(2025) |
A platform for analyzing translational control by RBPs at single-mRNA
resolution in cells |
0 |
412 |
| Ritsu Mizutori et al., Biophys. Physicobiol. Vol. 22, e220024
(2025) |
Molecular properties of a viral heliorhodopsin, V2HeR2 |
0 |
465 |
| Chika Okimura, Biophys. Physicobiol. Vol. 22, e220023 (2025) |
Stress fiber contraction induces cell body rotation in single keratocytes |
0 |
336 |
| Tomoaki Okaniwa et al., Biophys. Physicobiol. Vol. 22, e220022
(2025) |
Finding differentially expressed genes between cell fates predicted by
image-based deep learning |
0 |
427 |
| Tony Z. Jia et al., Biophys. Physicobiol. Vol. 22, e220021
(2025) |
Interdisciplinary investigations into the biophysics of the origins of
life |
0 |
387 |
| Masayuki Hayakawa et al., Biophys. Physicobiol. Vol. 22, e220020
(2025) |
Approaching active matter from biophysics perspective |
0 |
304 |
| Yuhei O. Tahara et al., Biophys. Physicobiol. Vol. 22, e220019
(2025) |
Visualization of peptidoglycan layer isolated from gliding diderm
bacteria, Flavobacterium johnsoniae and Myxococcus xanthus, by
quick-freeze deep-etch replica electron microscopy |
0 |
321 |
| Tomoyasu Noji et al., Biophys. Physicobiol. Vol. 22, e220018
(2025) |
Origin of the unique topology of the triangular water cluster
in Rubrobacter xylanophilus rhodopsin |
1 |
377 |
| Masaya Sagara et al., Biophys. Physicobiol. Vol. 22, e220017
(2025) |
Polymerization and stability of actin conjugated with polyethylene glycol |
0 |
307 |
| Abhishek Mallick et al., Biophys. Physicobiol. Vol. 22, e220016
(2025) |
Characterizing deterioration of milk through bioimpedance spectroscopy |
0 |
327 |
| Kodai Igarashi et al., Biophys. Physicobiol. Vol. 22, e220015
(2025) |
Protein–ligand affinity prediction via Jensen-Shannon divergence of
molecular dynamics simulation trajectories |
0 |
498 |
| Hiroto Takahashi et al., Biophys. Physicobiol. Vol. 22, e220014
(2025) |
HulaChrimson: A Chrimson-like cation channelrhodopsin discovered using
freshwater metatranscriptomics from Lake Hula |
1 |
671 |
| Amari Toshiki et al., Biophys. Physicobiol. Vol. 22, e220013
(2025) |
Cytoskeleton as a generator of characteristic physical properties of plant
cells: ‘cell wall,’ ‘large vacuole,’ and ‘cytoplasmic streaming’ |
0 |
702 |
| Arima Okutani et al., Biophys. Physicobiol. Vol. 22, e220012
(2025) |
A method for isolating and cryopreserving intact mitochondria with
improved integrity and functionality |
1 |
555 |
| Junichi Higo et al., Biophys. Physicobiol. Vol. 22, e220011
(2025) |
A virtual system-coupled molecular dynamics simulation free from
experimental knowledge on binding sites: Application to RNA-ligand binding
free-energy landscape |
0 |
577 |
| Kazuma Shimizu et al., Biophys. Physicobiol. Vol. 22, e220010
(2025) |
A low-cost electric micromanipulator and its application to single-cell
electroporation |
0 |
433 |
| Fumiya Kondo et al., Biophys. Physicobiol. Vol. 22, e220009
(2025) |
Structure-activity relationship of PET-degrading cutinase regulated by
weak Ca2+ binding and temperature |
1 |
523 |
| Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 22, e220008
(2025) |
Genetically-encoded temperature indicators for thermal biology |
0 |
815 |
| Nobutaka Shimizu et al., Biophys. Physicobiol. Vol. 22, e220007
(2025) |
Time-resolved small-angle X-ray scattering system development for the
biological macromolecules at SACLA: A pilot study |
0 |
632 |
| Kana Suzuki et al., Biophys. Physicobiol. Vol. 22, e220006
(2025) |
Gliding direction of Mycoplasma mobile correlates with the
curved configuration of its cell shape |
0 |
387 |
| Naoki Tomita et al., Biophys. Physicobiol. Vol. 22, e220005
(2025) |
Exploring hydrophilic sequence space to search for uncharted foldable
proteins by AlphaFold2 |
0 |
633 |
| Kochi Sato et al., Biophys. Physicobiol. Vol. 22, e220004 (2025) |
Improvement in positional accuracy of neural-network predicted hydration
sites of proteins by incorporating atomic details of water-protein
interactions and site-searching algorithm |
0 |
396 |
| Masataka Yoshimura et al., Biophys. Physicobiol. Vol. 22,
e220003 (2025) |
Product release and substrate entry of aldehyde deformylating oxygenase
revealed by molecular dynamics simulations |
1 |
670 |
| Yo Sat et al., Biophys. Physicobiol. Vol. 22, e220002 (2025) |
Measurement of protoplasmic streaming over the entire body
of Physarum plasmodium, and estimation of the transport and mixing
of protoplasma through the intricate vein network |
1 |
722 |
| Yuki Okamura et al., Biophys. Physicobiol. Vol. 22, e220001
(2025) |
Near-infrared spectroscopic study of blood flow changes in the
dorsolateral prefrontal cortex during pain relief by odor stimulation |
0 |
610 |
| Mikio Kataoka et al., Biophys. Physicobiol. Vol. 21, e212013
(2024) |
Half a Century of Biophysics: A Comparison of Presentation Statistics from
the 6th and 21st IUPAB Congresses |
1 |
334 |
| Kumiko Hayashi et al., Biophys. Physicobiol. Vol. 21, e212012
(2024) |
A round table at IUPAB Congress in Kyoto 2024: Dreaming the next 50 years
in our biophysics |
0 |
481 |
| Nathan Nunes Evangelista et al., Biophys. Physicobiol. Vol. 21,
e212011 (2024) |
Constructing virtual DNA-nanomachines |
1 |
291 |
| Lissy M Hartmann et al., Biophys. Physicobiol. Vol. 21, e212010
(2024) |
Using interactive deep learning to track cells: A report on a 3-day
hands-on training program at IUPAB 2024 |
1 |
244 |
| Huong T. Vu, Biophys. Physicobiol. Vol. 21, e212009 (2024) |
DNA nanomachine tutorial |
1 |
343 |
| Nor Akmalyati Sulong et al., Biophys. Physicobiol. Vol. 21,
e212008 (2024) |
GENESIS and CHARMM-GUI: Advances and applications from Hands-on training
program C at RIKEN |
1 |
292 |
| Yuze Sun, Biophys. Physicobiol. Vol. 21, e212007 (2024) |
Hands-on training experience of C-trap |
0 |
291 |
| Asuka Takeda-Sakazume, Biophys. Physicobiol. Vol. 21, e212006
(2024) |
Experience report of Hands-on Training Program E: Exploring multi-cellular
mechanics |
1 |
214 |
| Karina New, Biophys. Physicobiol. Vol. 21, e212005 (2024) |
IUPAB and BSJ meeting Kyoto: Reflections on hands on workshop “Real-time
single-molecule experiments with optical tweezers and correlated fluorescence
microscopy” with LUMICKS C-trap, emphasising the importance of practicing
international and interdisciplinary science |
1 |
248 |
| Koki Yoshida, Biophys. Physicobiol. Vol. 21, e212004 (2024) |
Experience of Hands-on training program on DNA Nanomachine at IUPAB2024 |
1 |
263 |
| Zuzana Johanovská, Biophys. Physicobiol. Vol. 21, e212003 (2024) |
Feeling a nanoworld with optical tweezers: Hands on training at IUPAB 2024 |
1 |
241 |
| Yuze Sun, Biophys. Physicobiol. Vol. 21, e212002 (2024) |
Hands-on training experience of C-trap |
1 |
255 |
| Hiroyuki Noji, Biophys. Physicobiol. Vol. 21, e212001 (2024) |
Editorial: IUPAB2024 Congress in Kyoto |
6 |
549 |
| Michio Hiroshima et al., Biophys. Physicobiol. Vol. 21, e211018
(2024) |
Application of single-molecule analysis to singularity phenomenon of cells |
1 |
507 |
| Taro Ichimura et al., Biophys. Physicobiol. Vol. 21, e211017
(2024) |
Strength in numbers: Unleashing the potential of trans-scale scope
AMATERAS for massive cell quantification |
2 |
934 |
| Hideaki Fujita et al., Biophys. Physicobiol. Vol. 21, e211016
(2024) |
Yuragi biomarker concept for evaluating human induced pluripotent stem
cells using heterogeneity-based Raman finger-printing |
1 |
614 |
| Yuriko Yoneda et al., Biophys. Physicobiol. Vol. 21, e211015
(2024) |
Real-time imaging of human endothelial-to-hematopoietic transition in
vitro using pluripotent stem cell derived hemogenic endothelium |
1 |
628 |
| Sulimon Sattari et al., Biophys. Physicobiol. Vol. 21, e211014
(2024) |
Inferring the roles of individuals in collective systems using
information-theoretic measures of influence |
2 |
617 |
| Takeharu Nagai, Biophys. Physicobiol. Vol. 21, e211013 (2024) |
Editorial: Singularity Biology and Beyond |
1 |
547 |
| Shunsuke Mori et al., Biophys. Physicobiol. Vol. 21,
e211012 (2024) |
Model systems for discovering evolutionary singularity of bilaterian
physiological regulation: lessons from studies on simple/primitive flatworms |
0 |
489 |
| Tomonobu M Watanabe et al., Biophys. Physicobiol. Vol. 21,
e211011 (2024) |
Visualizing Singularity Phenomenon |
0 |
404 |
| Masahiro Ono, Biophys. Physicobiol. Vol. 21, e211010 (2024) |
Unraveling T-cell dynamics using fluorescent timer: Insights from the
Tocky system |
1 |
682 |
| Hisashi Shidara et al., Biophys. Physicobiol. Vol. 21, e211009
(2024) |
Chromophore-assisted light inactivation of target proteins for singularity
biology |
1 |
616 |
| Hiroko Bannai et al., Biophys. Physicobiol. Vol. 21, e211008
(2024) |
Research on the molecular mechanism of singularity phenomenon in
neurological disorders |
1 |
544 |
| Taku Okazaki et al., Biophys. Physicobiol. Vol. 21, e211007
(2024) |
Elucidating molecular and cellular mechanisms of singularity phenomena in
immunology |
0 |
404 |
| Tomoya Katakai et al., Biophys. Physicobiol. Vol. 21, e211006
(2024) |
A battle between two biological singularities: Immune response vs. cancer |
0 |
538 |
| Katsuyuki Shiroguchi, Biophys. Physicobiol. Vol. 21, e211005
(2024) |
Integration of single-cell manipulation, whole transcriptome analysis, and
image-based deep learning for studying “Singularity Biology” |
0 |
593 |
| Akihiro Sakama et al., Biophys. Physicobiol. Vol. 21, e211004
(2024) |
Current advances in the development of bioluminescent probes toward
spatiotemporal trans-scale imaging |
3 |
866 |
| Hitoshi Hashimoto et al., Biophys. Physicobiol. Vol. 21, e211003
(2024) |
Search for singularity cells at the onset of brain disorders using
whole-brain imaging |
0 |
412 |
| Rei Shirakawa et al., Biophys. Physicobiol. Vol. 21, e211002
(2024) |
Regulation of long-term memory by a few clock neurons in Drosophila |
0 |
768 |
| Kazuki Horikawa et al., Biophys. Physicobiol. Vol. 21, e211001
(2024) |
Analysis of the singularity cells controlling the pattern formation in
multi-cellular systems |
1 |
380 |
| Takayoshi Tsubo, Biophys. Physicobiol. Vol. 21, e210028 (2024) |
Neuron with well-designed ionic system |
0 |
341 |
| Thi-Hong-Tuoi Do et al., Biophys. Physicobiol. Vol. 21, e210027
(2024) |
Comparative study of alpha-glucosidase inhibition of four Vietnamese
medicinal plants Combretum quadrangulare, Dicranopteris
linearis, Psychotria adenophylla, and Garcinia
schomburgkiana: In vitro and in vivo studies |
1 |
423 |
| Kentaro Kito et al., Biophys. Physicobiol. Vol. 21, e210026
(2024) |
Electrophysiological analysis of hyperkalemic cardiomyocytes using a
multielectrode array system |
0 |
537 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 21, e210025 (2024) |
Announcement of BPPB paper awards 2024 |
0 |
327 |
| Atsuko Uenoyama et al., Biophys. Physicobiol. Vol. 21, e210024
(2024) |
Rapid in vitro method to assemble and transfer DNA fragments into the
JCVI-syn3B minimal synthetic bacterial genome through Cre/loxP system |
1 |
565 |
| Shigeo Sakuragi et al., Biophys. Physicobiol. Vol. 21, e210023
(2024) |
Inducing aggresome and stable tau aggregation in Neuro2a cells with an
optogenetic tool |
1 |
918 |
| Sakura Takada et al., Biophys. Physicobiol. Vol. 21, e210022
(2024) |
Artificial cell system as a tool for investigating pattern formation
mechanisms of intracellular reaction-diffusion waves |
1 |
869 |
| Akihiro Masuda et al., Biophys. Physicobiol. Vol. 21, e210021
(2024) |
Data-driven score tuning for ChooseLD: A structure-based drug design
algorithm with empirical scoring and evaluation of ligand–protein docking
predictability |
0 |
458 |
| Toshiki Yoda et al., Biophys. Physicobiol. Vol. 21, e210020
(2024) |
Four-color single-molecule imaging system for tracking GPCR dynamics with
fluorescent HiBiT peptide |
5 |
977 |
| Sena Tarumoto et al., Biophys. Physicobiol. Vol. 21, e210019
(2024) |
Monitoring of enzymatic cleavage reaction of GST-fusion protein on
biolayer interferometry sensor |
0 |
416 |
| Takanobu A. Katoh , Biophys. Physicobiol. Vol. 21, e210018
(2024) |
Function of nodal cilia in left-right determination: Mechanical regulation
in initiation of symmetry breaking |
2 |
569 |
| Shunsuke Tomita et al., Biophys. Physicobiol. Vol. 21, e210017
(2024) |
Chemical tongues as multipurpose bioanalytical tools for the
characterization of complex biological samples |
2 |
666 |
| Kohji Ito et al., Biophys. Physicobiol. Vol. 21, e210016 (2024) |
Unraveling the fastest myosin: Discovery history and structure-function
relationships of algae Chara myosin XI |
0 |
706 |
| Minoru Fukushima et al., Biophys. Physicobiol. Vol. 21, e210015
(2024) |
Internal structure of Mycoplasma mobile gliding machinery
analyzed by negative staining electron tomography |
1 |
643 |
| Hiroyuki Iwamoto et al., Biophys. Physicobiol. Vol. 21, e210014
(2024) |
X-ray diffraction recording from a small amount of fibrous protein
materials oriented by a micro shear-flow cell |
0 |
584 |
| Nasori Nasori et al., Biophys. Physicobiol. Vol. 21, e210013
(2024) |
Optimizing tumor treating fields for blood cancer therapy: Analysis of
electric field distribution and dose density |
1 |
654 |
| Hisashi Shimamura et al., Biophys. Physicobiol. Vol. 21, e210012
(2024) |
Charge block-driven liquid-liquid phase separation: A mechanism of how
phosphorylation regulates phase behavior of disordered proteins |
4 |
1269 |
| Kota Katayama et al., Biophys. Physicobiol. Vol. 21, e210011
(2024) |
Holistic concepts in GPCR dynamics |
1 |
514 |
| Yusuke Sato et al., Biophys. Physicobiol. Vol. 21, e210010
(2024) |
Pioneering artificial cell-like structures with DNA nanotechnology-based
liquid-liquid phase separation |
6 |
1054 |
| Shang-Te_Danny Hsu, Biophys. Physicobiol. Vol. 21, e210009
(2024) |
The Asian Biophysics Association: Reborn from the COVID-19 pandemic |
1 |
512 |
| Ananta Kusuma Yoga Pratama et al., Biophys. Physicobiol. Vol.
21, e210008 (2024) |
Resonance frequency measurement to identify stiffness variations based on
photoacoustic imaging |
1 |
647 |
| Chisato Okamoto et al., Biophys. Physicobiol. Vol. 21, e210007
(2024) |
Molecular dynamics simulation analysis of structural dynamic cross
correlation induced by odorant hydrogen-bonding in mouse eugenol ol- factory
receptor |
7 |
824 |
| Seine A. Shintani, Biophys. Physicobiol. Vol. 21, e210006 (2024) |
Observation of sarcomere chaos induced by changes in calcium concentration
in cardiomyocytes |
4 |
698 |
| Takashi Ohgita et al., Biophys. Physicobiol. Vol. 21, e210005
(2024) |
Physicochemical mechanisms of aggregation and fibril formation of
α-synuclein and apolipoprotein A-I |
1 |
866 |
| Hiroshi Sunami et al., Biophys. Physicobiol. Vol. 21, e210004
(2024) |
Shape of scaffold controlling the direction of cell migration |
3 |
769 |
| Hirohito Yamazaki et al., Biophys. Physicobiol. Vol. 21, e210003
(2024) |
The potential of nanopore technologies toward empowering biophysical
research: Brief history, basic principle and applications |
2 |
741 |
| Minoru Kurisu et al., Biophys. Physicobiol. Vol. 21, e210002
(2024) |
Concepts of a synthetic minimal cell: Information molecules, metabolic
pathways, and vesicle reproduction |
3 |
1021 |
| Yoshihiko Furuike et al., Biophys. Physicobiol. Vol. 21, e210001
(2024) |
Structure-function relationship of KaiC around dawn |
2 |
1101 |
| Junichi Higo et al., Biophys. Physicobiol. Vol. 20, e200047
(2023) |
Binding free-energy landscapes of small molecule binder and non-binder to
FMN riboswitch: All-atom molecular dynamics |
3 |
522 |
| Daisuke Kohda et al., Biophys. Physicobiol. Vol. 20, e200046
(2023) |
Residue-based correlation between equilibrium and rate constants is an
experimental formulation of the consistency principle for smooth structural
changes of proteins |
1 |
527 |
| Daiki Fukuhara et al., Biophys. Physicobiol. Vol. 20, e200045
(2023) |
Inhibition of amyloid-β(16–22) aggregation by polyphenols using replica
permutation with solute tempering molecular dynamics simulation |
6 |
502 |
| Takahiro Yamashita et al., Biophys. Physicobiol. Vol. 20,
e200044 (2023) |
Welcome to the borderless rhodopsin world |
0 |
649 |
| Madoka Suzuki et al., Biophys. Physicobiol. Vol. 20, e200043
(2023) |
Hybrid Biophysics: Interdisciplinary approaches for trans-scale analysis
of organism-environment interactions |
0 |
430 |
| Izuru Kawamura et al., Biophys. Physicobiol. Vol. 20, e200042
(2023) |
Bottom-up creation of cell-free molecular systems: Basic research toward
social implementation |
0 |
517 |
| Takashi Sumikama et al., Biophys. Physicobiol. Vol. 20, e200041
(2023) |
Updating view of membrane transport proteins by simulation studies |
0 |
507 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 20, e200040 (2023) |
Announcement of BPPB paper awards 2023 |
0 |
457 |
| Hiroyuki Noji, Biophys. Physicobiol. Vol. 20, e200039 (2023) |
Rocking Out Biophysics in IUPAB2024 Kyoto! |
5 |
701 |
| Junko Nakai et al., Biophys. Physicobiol. Vol. 20, e200038
(2023) |
Changes in protein phosphorylation by insulin administration in the
central nervous system of the gastropod mollusk Lymnaea stagnalis |
1 |
622 |
| Tomohiro Shima et al., Biophys. Physicobiol. Vol. 20, e200037
(2023) |
The third Japan-U.S. symposium on motor proteins and associated
single-molecule biophysics |
0 |
572 |
| Rawiwan Wongnak et al., Biophys. Physicobiol. Vol. 20, e200036
(2023) |
E. coli production of a multi-disulfide bonded SARS-CoV-2 Omicron
BA.5 RBD exhibiting native-like biochemical and biophysical properties |
4 |
723 |
| Yuya Hanazono et al., Biophys. Physicobiol. Vol. 20, e200035
(2023) |
Description of peptide bond planarity from high-resolution neutron
crystallography |
2 |
645 |
| So Nakashima et al., Biophys. Physicobiol. Vol. 20, e200034
(2023) |
Population dynamics models for various forms of adaptation |
0 |
719 |
| Tohru Minamino et al., Biophys. Physicobiol. Vol. 20, e200033
(2023) |
Frontiers of microbial movement research |
0 |
725 |
| Ryota Sakamoto et al., Biophys. Physicobiol. Vol. 20, e200032
(2023) |
Unveiling the physics underlying symmetry breaking of the actin
cytoskeleton: An artificial cell-based approach |
0 |
970 |
| Tatsuya Iida et al., Biophys. Physicobiol. Vol. 20, e200031
(2023) |
SATORI: Amplification-free digital RNA detection method for the diagnosis
of viral infections |
7 |
1004 |
| Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 20, e200030
(2023) |
Joule heating involving ion currents through channel proteins |
2 |
1118 |
| Hiroki Yasuga, Biophys. Physicobiol. Vol. 20, e200029 (2023) |
Methods to spontaneously generate three dimensionally arrayed
microdroplets triggered by capillarity for bioassays and bioengineering |
0 |
593 |
| Kanji Takahashi et al., Biophys. Physicobiol. Vol. 20, e200028
(2023) |
Ring formation by Vibrio fusion protein composed of FliF and
FliG, MS-ring and C-ring component of bacterial flagellar motor in membrane |
4 |
607 |
| Yutaro Nagasawa et al., Biophys. Physicobiol. Vol. 20, e200027
(2023) |
LOV2-based photoactivatable CaMKII and its application to single synapses:
Local Optogenetics |
0 |
792 |
| Shunsuke Tagami, Biophys. Physicobiol. Vol. 20, e200026 (2023) |
Why we are made of proteins and nucleic acids: Structural biology views on
extraterrestrial life |
2 |
1223 |
| Manabu Hori et al., Biophys. Physicobiol. Vol. 20, e200025
(2023) |
RNA interference reveals the escape response mechanism
of Paramecium to mechanical stimulation |
1 |
666 |
| Yoshiaki Kinosita et al., Biophys. Physicobiol. Vol. 20, e200024
(2023) |
Flagellar polymorphism-dependent bacterial swimming motility in a
structured environment |
2 |
588 |
| Kenta Odagiri et al., Biophys. Physicobiol. Vol. 20, e200023
(2023) |
Mathematical model for promotion of wound closure with ATP release |
3 |
475 |
| Shigeyuki Matsumoto et al., Biophys. Physicobiol. Vol. 20,
e200022 (2023) |
Quantitative analysis of protein dynamics using a deep learning technique
combined with experimental cryo-EM density data and MD simulations |
3 |
780 |
| Hiroshi Imamura, Biophys. Physicobiol. Vol. 20, e200021 (2023) |
Phone2SAS: 3D scanning by smartphone aids the realization of small-angle
scattering |
1 |
559 |
| Shingo Wakao et al., Biophys. Physicobiol. Vol. 20, e200020
(2023) |
Mathematical model of structural changes in nuclear speckle |
0 |
768 |
| Atsushi Mochizuki, Biophys. Physicobiol. Vol. 20, e200019 (2023) |
Controlling complex dynamical systems based on the structure of the
networks |
1 |
502 |
| Hiromi Miyoshi et al., Biophys. Physicobiol. Vol. 20, e200018
(2023) |
Guideline for design of substrate stiffness for mesenchymal stem cell
culture based on heterogeneity of YAP and RUNX2 responses |
3 |
785 |
| Tatsuki Negami et al., Biophys. Physicobiol. Vol. 20, e200017
(2023) |
Calculations of the binding free energies of the Comprehensive in
vitro Proarrhythmia Assay (CiPA) reference drugs to cardiac ion channels |
2 |
822 |
| Tomoyoshi Seto, Biophys. Physicobiol. Vol. 20, e200016 (2023) |
General anesthetic binding mode via hydration with weak affinity and
molecular discrimination: General anesthetic dissolution in interfacial water
of the common binding site of GABAA receptor |
1 |
689 |
| Takashi Tominaga et al., Biophys. Physicobiol. Vol. 20, e200015
(2023) |
Stable wide-field voltage imaging for observing neuronal plasticity at the
neuronal network level |
3 |
711 |
| Yasuha Watanabe et al., Biophys. Physicobiol. Vol. 20, e200014
(2023) |
Molecular mechanisms of the high performance of spider silks revealed
through multi-omics analysis |
10 |
1100 |
| Keiichi Yamaguchi et al., Biophys. Physicobiol. Vol. 20,
e200013 (2023) |
Mechanisms of polyphosphate-induced amyloid fibril formation triggered by
breakdown of supersaturation |
5 |
757 |
| Tony Z. Jia et al., Biophys. Physicobiol. Vol. 20, e200012
(2023) |
Recent progress in primitive polyester synthesis and membraneless
microdroplet assembly |
4 |
810 |
| Takayuki Umakoshi, Biophys. Physicobiol. Vol. 20, e200011 (2023) |
Near-field optical microscopy toward its applications for biological
studies |
4 |
819 |
| Hirohito Yamazaki et al., Biophys. Physicobiol. Vol. 20, e200010
(2023) |
Accelerating biophysical studies and applications by label-free nanopore
sensing |
0 |
752 |
| Kohei Otomo et al., Biophys. Physicobiol. Vol. 20, e200009
(2023) |
Improving two-photon excitation microscopy for sharper and faster
biological imaging |
1 |
876 |
| Toshiki Yagi et al., Biophys. Physicobiol. Vol. 20, e200008
(2023) |
Regulation of motor activity of ciliary outer-arm dynein by the light
chain 1; Implications from the structure of the light chain bound to the
microtubule-binding domain of the heavy chain |
1 |
673 |
| Hidekazu Hiroaki, Biophys. Physicobiol. Vol. 20, e200007 (2023) |
Molecular mechanisms of amyloid-β peptide fibril and oligomer formation:
NMR-based challenges |
5 |
1009 |
| Shintaroh Kubo et al., Biophys. Physicobiol. Vol. 20, e200006
(2023) |
Removing the parachuting artifact using two-way scanning data in
high-speed atomic force microscopy |
7 |
975 |
| Tomoyoshi Seto, Biophys. Physicobiol. Vol. 20, e200005 (2023) |
General anesthetic binding mode via hydration with weak affinity and
molecular discrimination: General anesthetic dissolution in interfacial water
of the common binding site of GABAA receptor |
1 |
610 |
| Akiko Yamada et al., Biophys. Physicobiol. Vol. 20, e200004
(2023) |
Regulatory mechanisms of mitochondrial calcium uptake by the calcium
uniporter complex |
4 |
706 |
| Kanta Fujimoto et al., Biophys. Physicobiol. Vol. 20, e200003
(2023) |
Revisiting oxytocin generation in keratinocytes |
5 |
704 |
| Atsushi Hirano, Biophys. Physicobiol. Vol. 20, e200002 (2023) |
What is Aromaphilicity? |
2 |
628 |
| Kento Yonezawa et al., Biophys. Physicobiol. Vol. 20, e200001
(2023) |
MOLASS: Software for automatic processing of matrix data obtained from
small-angle X-ray scattering and UV–visible spectroscopy combined with
size-exclusion chromatography |
13 |
969 |
| María del Carmen Marín et al., Biophys. Physicobiol. Vol. 20,
e201023 (2023) |
Biophysical characterization of microbial rhodopsins with DSE motif |
2 |
846 |
| Takayuki Uchihashi et al., Biophys. Physicobiol. Vol. 20,
e201022 (2023) |
Introduction of Session 2, “Advanced methods for retinal proteins” |
0 |
334 |
| Yuki Sudo, Biophys. Physicobiol. Vol. 20, e201021 (2023) |
Introduction of Session 1, “Photochemistry of retinal proteins” |
0 |
351 |
| Hiroo Imai et al., Biophys. Physicobiol. Vol. 20, e201020 (2023) |
Optogenetics II, sponsored by JST: Report for the session 13 |
0 |
318 |
| Hiroo Imai et al., Biophys. Physicobiol. Vol. 20, e201019 (2023) |
Functional diversity and evolution in animal rhodopsins: Report for the
session 11 |
0 |
369 |
| Hiroo Imai et al., Biophys. Physicobiol. Vol. 20, e201018
(2023) |
Function of animal rhodopsins and related proteins: Report for the session
9 |
0 |
290 |
| Sui Arikawa et al., Biophys. Physicobiol. Vol. 20, e201017
(2023) |
Solid-state NMR for the characterization of retinal chromophore and Schiff
base in TAT rhodopsin embedded in membranes under weakly acidic conditions |
6 |
550 |
| Akihiro Otomo et al., Biophys. Physicobiol. Vol. 20, e201016
(2023) |
Protein dynamics of a light-driven Na+ pump rhodopsin probed using a
tryptophan residue near the retinal chromophore |
0 |
653 |
| Takeshi Murata, Biophys. Physicobiol. Vol. 20, e201015 (2023) |
Introduction of Session 8, “Structural mechanism of animal rhodopsins and
GPCR” |
0 |
336 |
| Tsutomu Kouyama et al., Biophys. Physicobiol. Vol. 20, e201014
(2023) |
Structural mechanism of microbial rhodopsins: Report for the session 4 at
the 19th International Conference on Retinal Proteins |
0 |
392 |
| Yoshitaka Fukada, Biophys. Physicobiol. Vol. 20, e201013 (2023) |
Recent advances in biological rhythm and non-visual photoreception: Report
for the session 10 at the 19th International Conference on Retinal Proteins |
1 |
385 |
| Takeshi Murata, Biophys. Physicobiol. Vol. 20, e201012 (2023) |
Introduction of Session 7, “Functional diversity and evolution in
microbial rhodopsins” |
0 |
341 |
| Elena G. Govorunova et al., Biophys. Physicobiol. Vol. 20,
e201011 (2023) |
Potassium-selective channelrhodopsins |
7 |
809 |
| Peter Hegemann et al., Biophys. Physicobiol. Vol. 20, e201010
(2023) |
Dieter Oesterhelt (1940–2022): Life with light and color, pioneer of
membrane protein research |
2 |
1262 |
| Kazumi Shimono et al., Biophys. Physicobiol. Vol. 20, e201009
(2023) |
Recent advances in signaling and activation mechanism in microbial
rhodopsins: Report for the session 6 at the 19th International
Conference on Retinal Proteins |
0 |
421 |
| Kumari Sushmita et al., Biophys. Physicobiol. Vol. 20, e201008
(2023) |
Algal rhodopsins encoding diverse signal sequence holds potential for
expansion of organelle optogenetics |
2 |
817 |
| Jonathan R. Church et al., Biophys. Physicobiol. Vol. 20,
e201007 (2023) |
Induction effects on the absorption maxima of photoreceptor proteins |
1 |
732 |
| Mikio Kataoka, Biophys. Physicobiol. Vol. 20, e201006 (2023) |
Structural studies of bacteriorhodopsin in BC era |
1 |
620 |
| Yuji Furutani et al., Biophys. Physicobiol. Vol. 20, e201005
(2023) |
Ion-transporting mechanism in microbial rhodopsins: Mini-review relating
to the session 5 at the 19th International Conference on Retinal Proteins |
1 |
804 |
| Satoru Kawamura et al., Biophys. Physicobiol. Vol. 20, e201004
(2023) |
Introduction of Session 14, “Physiology of retinal proteins” |
0 |
310 |
| Chii-Shen Yang et al., Biophys. Physicobiol. Vol. 20, e201003
(2023) |
From activation dynamics to functional diversity of retinal proteins:
Report for the session 3 at the 19th International Conference on Retinal
Proteins |
0 |
371 |
| Mikio Kataoka et al., Biophys. Physicobiol. Vol. 20, e201002
(2023) |
Recent advances in optogenetics: Report for the session 12 at the 19th
International Conference on Retinal Proteins |
2 |
567 |
| Yuki Sudo et al., Biophys. Physicobiol. Vol. 20, e201001 (2023) |
Forewords to the special issue “Recent advances in retinal protein
research |
0 |
507 |
| Sristilekha Nath et al., Biophys. Physicobiol. Vol. 19, e190048
(2022) |
Intestinal and optic-cup organoids as tools for unveiling mechanics of
self-organizing morphogenesis |
1 |
635 |
| Tasuku Hirayama et al., Biophys. Physicobiol. Vol. 19, e190047
(2022) |
Live-cell imaging of bio-metal species |
0 |
521 |
| Tohru Minamino et al., Biophys. Physicobiol. Vol. 19, e190046
(2022) |
Activation mechanism of the bacterial flagellar dual-fuel protein export
engine |
6 |
705 |
| Tsutomu Yamane et al., Biophys. Physicobiol. Vol. 19, e190045
(2022) |
Development of the force field for cyclosporine A |
1 |
956 |
| Akira Kitamura et al., Biophys. Physicobiol. Vol. 19, e190044
(2022) |
Physico- and chemical biology using nanomanipulation and micromanipulation
technologies |
0 |
603 |
| Kazuma Yasuhara et al., Biophys. Physicobiol. Vol. 19, e190043
(2022) |
Creation of supramolecular biomembrane by the bottom-up self-assembly:
Where material science meets biophysics |
2 |
645 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 19, e190042 (2022) |
Announcement of BPPB paper awards 2022 |
0 |
540 |
| Chiaki Seto et al., Biophys. Physicobiol. Vol. 19, e190041
(2022) |
Influence of gap junctions upon Ca2+ propagation from stimulated
keratinocytes to DRG neurons |
3 |
816 |
| Masami Lintuluoto et al., Biophys. Physicobiol. Vol. 19, e190040
(2022) |
Investigation on substrate specificity and catalytic activity of serine
protease neuropsin |
2 |
865 |
| Akihiro Otomo et al., Biophys. Physicobiol. Vol. 19, e190039
(2022) |
Tackle “Molecular Engine” by early-career researchers |
0 |
712 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 19, e190038 (2022) |
Announcement of new Editorial Board members |
1 |
624 |
| Akira Sasaki et al., Biophys. Physicobiol. Vol. 19, e190037
(2022) |
Standardization of luminescence, fluorescence measurements, and light
microscopy: Current situation and perspectives |
2 |
721 |
| Hiroyuki Ebata et al., Biophys. Physicobiol. Vol. 19, e190036
(2022) |
Interplay among cell migration, shaping, and traction force on a matrix
with cell-scale stiffness heterogeneity |
0 |
1196 |
| Naoki Yamamoto et al., Biophys. Physicobiol. Vol. 19, e190035
(2022) |
Protein large-scale motions revealed by quantum beams: A new era in
understanding protein dynamics |
0 |
795 |
| Shingo Sotoma et al., Biophys. Physicobiol. Vol. 19, e190034
(2022) |
Quantum nanodiamonds for sensing of biological quantities: Angle,
temperature, and thermal conductivity |
10 |
1708 |
| Kayo Hibino, Biophys. Physicobiol. Vol. 19, e190033 (2022) |
Participation in 44th Indian Biophysical Society Meeting |
0 |
649 |
| Ryo Iizuka et al., Biophys. Physicobiol. Vol. 19, e190032 (2022) |
Zero-mode waveguides and nanopore-based sequencing technologies accelerate
single-molecule studies |
9 |
1682 |
| Makito Miyazaki et al., Biophys. Physicobiol. Vol. 19, e190031
(2022) |
Uncovering the design principles of supramolecular assemblies through
manipulation of the structures, dynamics, and functions |
0 |
822 |
| Kumiko Hayashi et al., Biophys. Physicobiol. Vol. 19, e190030
(2022) |
Japan–US symposium on motor proteins and associated single-molecule
biophysics |
1 |
749 |
| Madoka Suzuki et al., Biophys. Physicobiol. Vol. 19, e190029
(2022) |
A five-course meal symposium on “The Future of Muscle is Now” |
1 |
757 |
| Ryo Kitahara et al., Biophys. Physicobiol. Vol. 19, e190028
(2022) |
Phase separation by biopolymers: Basics and applications |
0 |
902 |
| Takeru Kameda et al., Biophys. Physicobiol. Vol. 19, e190027
(2022) |
Molecular dynamics analysis of biomolecular systems including nucleic
acids |
5 |
1602 |
| Takuya Ohmura et al., Biophys. Physicobiol. Vol. 19, e190026
(2022) |
Simple dynamics underlying the survival behaviors of ciliates |
3 |
1272 |
| Ha T. T. Duong et al., Biophys. Physicobiol. Vol. 19, e190025
(2022) |
Computational study of the impact of nucleotide variations on highly
conserved proteins: In the case of actin |
1 |
1005 |
| Takahiro Muraoka et al., Biophys. Physicobiol. Vol. 19, e190024
(2022) |
Biophysical elucidation of neural network and chemical regeneration of
neural tissue |
0 |
967 |
| Matsuyuki Shirota et al., Biophys. Physicobiol. Vol. 19, e190023
(2022) |
Current status and future perspectives of the evaluation of missense
variants by using three-dimensional structures of proteins |
0 |
979 |
| Daisuke Kuroda et al., Biophys. Physicobiol. Vol. 19, e190022
(2022) |
Microsecond molecular dynamics suggest that a non-synonymous mutation,
frequently observed in patients with mild symptoms in Tokyo, alters dynamics
of the SARS-CoV-2 main protease |
10 |
1592 |
| Kenji Mishima et al., Biophys. Physicobiol. Vol. 19, e190021
(2022) |
Estimation of the relative contributions to the electronic energy transfer
rates based on Förster theory: The case of C-phycocyanin chromophores |
10 |
2180 |
| Kyoko Shinzawa-Itoh et al., Biophys. Physicobiol. Vol. 19,
e190020 (2022) |
Biochemical and crystallographic studies of monomeric and dimeric bovine
cytochrome c oxidase |
2 |
1585 |
| Izuru Kawamura et al., Biophys. Physicobiol. Vol. 19, e190019
(2022) |
Structure of a retinal chromophore of dark-adapted middle rhodopsin as
studied by solid-state nuclear magnetic resonance spectroscopy |
0 |
1187 |
| Masayuki Oda, Biophys. Physicobiol. Vol. 19, e190018 (2022) |
Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme
and its engineering: application to enzymatic PET depolymerization |
2 |
1390 |
| Koya Sakuma, Biophys. Physicobiol. Vol. 19, e190017 (2022) |
Limitations of the ABEGO-based backbone design: ambiguity between
αα-corner and αα-hairpin |
3 |
1227 |
| Takamitsu J Morikawa et al., Biophys. Physicobiol. Vol. 19,
e190016 (2022) |
Glycine insertion modulates the fluorescence properties of Aequorea
victoria green fluorescent protein and its variants in their ambient
environment |
11 |
1807 |
| Keisuke Inoue et al., Biophys. Physicobiol. Vol. 19, e190015
(2022) |
Coarse-grained molecular dynamics simulations of base-pair mismatch
recognition protein MutS sliding along DNA |
4 |
1363 |
| Etsuro Ito et al., Biophys. Physicobiol. Vol. 19, e190014 (2022) |
Dorsolateral prefrontal cortex sensing analgesia |
6 |
1705 |
| Toru Kondo et al., Biophys. Physicobiol. Vol. 19, e190013 (2022) |
Recent advances in single-molecule spectroscopy studies on
light-harvesting processes in oxygenic photosynthesis |
7 |
1656 |
| Shinjiro Nakahata et al., Biophys. Physicobiol. Vol. 19, e190012
(2022) |
Mathematical model of chromosomal dynamics during DNA double strand break
repair in budding yeast |
1 |
1407 |
| Takao K. Suzuki, Biophys. Physicobiol. Vol. 19, e190011 (2022) |
Phenotypic systems biology for organisms: Concepts, methods and case
studies |
4 |
2034 |
| Yuhei Tachi et al., Biophys. Physicobiol. Vol. 19, e190010
(2022) |
Molecular dynamics simulations of amyloid-β peptides in heterogeneous
environments |
9 |
1662 |
| Fumiaki Kono et al., Biophys. Physicobiol. Vol. 19, e190009
(2022) |
Current status of neutron crystallography in structural biology |
15 |
1607 |
| Damien Simon et al., Biophys. Physicobiol. Vol. 19, e190008
(2022) |
Slow and temperature-compensated autonomous disassembly of KaiB–KaiC
complex |
6 |
1628 |
| Hideaki Yoshimura , Biophys. Physicobiol. Vol. 19, e190007
(2022) |
Triple-color single-molecule imaging for analysis of the role of receptor
oligomers in signal transduction |
0 |
2137 |
| Hiroaki Yokota, Biophys. Physicobiol. Vol. 19, e190006 (2022) |
Quantitative and kinetic single-molecule analysis of DNA unwinding
by Escherichia coli UvrD helicase |
4 |
1869 |
| Taro Furubayashi et al., Biophys. Physicobiol. Vol. 19, e190005
(2022) |
How evolution builds up complexity?: In vitro evolution approaches to
witness complexification in artificial molecular replication systems |
0 |
2267 |
| Satoru Tokutomi et al., Biophys. Physicobiol. Vol. 19, e190004
(2022) |
A variety of photoreceptors and the frontiers of optogenetics |
0 |
1914 |
| Yuka Oka et al., Biophys. Physicobiol. Vol. 19, e190003 (2022) |
Ionic strength-sensitive and pH-insensitive interactions between
C-reactive protein (CRP) and an anti-CRP antibody |
7 |
2191 |
| Ryohei Kondo et al., Biophys. Physicobiol. Vol. 19, e190002
(2022) |
Information quantity for secondary structure propensities of protein
subsequences in the Protein Data Bank |
0 |
1554 |
| Takashi Fujishiro et al., Biophys. Physicobiol. Vol. 19, e190001
(2022) |
Structural diversity of cysteine desulfurases involved in iron-sulfur
cluster biosynthesis |
21 |
1801 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S076 (2021) |
Appendix |
0 |
167 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S066 (2021) |
Chapter 8: Brownian Motion |
0 |
242 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S056 (2021) |
Chapter 7: Local Temperature |
0 |
238 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S044 (2021) |
Part II. Application of Statistical Mechanics in Biological Phenomena6.1 |
0 |
327 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S041 (2021) |
Chapter 5: Summary of Part I |
0 |
327 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S035 (2021) |
Chapter 4: Always “Now” is the Peak Moment |
0 |
306 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S025 (2021) |
Chapter 3: Changing the Rules |
0 |
338 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S012 (2021) |
Chapter 2: Consumption Tax in the World of Molecules |
0 |
507 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S008 (2021) |
Part I. Experiencing the basics of statistical mechanics using your hands |
0 |
446 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S003 (2021) |
Oosawa’s Preface |
0 |
493 |
| Editorial team for the Special Issue on Oosawa’s Lectures,
Biophys. Physicobiol. Vol. 18S, S001 (2021) |
Editorial: English translation of “The Oosawa Lectures on DIY Statistical
Mechanics” |
1 |
724 |
| Takashi Kikukawa, Biophys. Physicobiol. Vol. 18, 317 (2021) |
Unique Cl– pump rhodopsin with close similarity to H+ pump
rhodopsin |
2 |
569 |
| Hiroaki Hata et al., Biophys. Physicobiol. Vol. 18, 305 (2021) |
Binding free energy of protein/ligand complexes calculated using
dissociation Parallel Cascade Selection Molecular Dynamics and Markov state
model |
54 |
1714 |
| Takayoshi Tsubo, Biophys. Physicobiol. Vol. 18, 290 (2021) |
Analysis of the mechanism of synaptic integration focusing on the charge
held in the spine |
1 |
965 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 18, 289 (2021) |
Announcement of BPPB paper awards 2021 |
0 |
408 |
| Naoki Yamamoto et al., Biophys. Physicobiol. Vol. 18, 284 (2021) |
Protein hydration and its freezing phenomena: Toward the application for
cell freezing and frozen food storage |
1 |
673 |
| Katsumasa Irie, Biophys. Physicobiol. Vol. 18, 274 (2021) |
The insights into calcium ion selectivity provided by ancestral
prokaryotic ion channels |
4 |
800 |
| Tony Z. Jia et al., Biophys. Physicobiol. Vol. 18, 269 (2021) |
Increasing complexity of primitive compartments |
3 |
797 |
| Shuji Akiyama et al., Biophys. Physicobiol. Vol. 18, 267 (2021) |
Beyond multi-disciplinary and cross-scale analyses of the cyanobacterial
circadian clock system |
0 |
601 |
| Haruki Nakamura et al., Biophys. Physicobiol. Vol. 18, 265
(2021) |
Technical development and sharing of high-resolution cryo-electron
microscopes |
0 |
652 |
| Akihiko Ishijima et al., Biophys. Physicobiol. Vol. 18, 263
(2021) |
Information biophysics of gradient sensing in organisms |
0 |
605 |
| Takuma Sugi et al., Biophys. Physicobiol. Vol. 18, 254 (2021) |
Collective pattern formations of animals in active matter physics |
2 |
894 |
| Chan-Gi Pack, Biophys. Physicobiol. Vol. 18, 244 (2021) |
Application of quantitative cell imaging using label-free optical
diffraction tomography |
2 |
808 |
| Kumiko Hayashi et al., Biophys. Physicobiol. Vol. 18, 241 (2021) |
Japan-US symposium on cytoskeletal motor proteins and their associated
proteins |
2 |
610 |
| Atsushi Hijikata et al., Biophys. Physicobiol. Vol. 18, 226
(2021) |
Current status of structure-based drug repurposing against COVID-19 by
targeting SARS-CoV-2 proteins |
8 |
937 |
| Hiroyuki Noji, Biophys. Physicobiol. Vol. 18, 224 (2021) |
Greetings from the President of Biophysical Society of Japan:
Traditionally open culture for fostering creative biophysics |
0 |
486 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 18, 223 (2021) |
Improve publishing procedures of Biophysics and Physicobiology |
0 |
390 |
| Daisuke Kuroda et al., Biophys. Physicobiol. Vol. 18, 215 (2021) |
Microsecond molecular dynamics suggest that a non-synonymous mutation,
frequently observed in patients with mild symptoms in Tokyo, alters dynamics
of the SARS-CoV-2 main protease |
3 |
854 |
| Kenji Mishima et al., Biophys. Physicobiol. Vol. 18, 196 (2021) |
Estimation of the relative contributions to the electronic energy transfer
rates based on Förster theory: The case of C-phycocyanin chromophores |
4 |
964 |
| Kyoko Shinzawa-Itoh et al., Biophys. Physicobiol. Vol. 18, 186
(2021) |
Biochemical and crystallographic studies of monomeric and dimeric bovine
cytochrome c oxidase |
4 |
624 |
| Izuru Kawamura et al., Biophys. Physicobiol. Vol. 18, 177 (2021) |
Structure of a retinal chromophore of dark-adapted middle rhodopsin as
studied by solid-state nuclear magnetic resonance spectroscopy |
6 |
1055 |
| Masayuki Oda, Biophys. Physicobiol. Vol. 18, 168 (2021) |
Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme
and its engineering: application to enzymatic PET depolymerization |
13 |
914 |
| Koya Sakuma, Biophys. Physicobiol. Vol. 18, 159 (2021) |
Limitations of the ABEGO-based backbone design: ambiguity between
αα-corner and αα-hairpin |
0 |
1244 |
| Takamitsu J Morikawa et al., Biophys. Physicobiol. Vol. 18, 145
(2021) |
Glycine insertion modulates the fluorescence properties of Aequorea
victoria green fluorescent protein and its variants in their ambient
environment |
1 |
907 |
| Udoy S. Basak et al., Biophys. Physicobiol. Vol. 18, 131 (2021) |
Transfer entropy dependent on distance among agents in quantifying
leader-follower relationships |
7 |
1299 |
| Masashi Unno et al., Biophys. Physicobiol. Vol. 18, 127 (2021) |
Spectroscopic approach for exploring structure and function of
photoreceptor proteins |
2 |
789 |
| Yusuke Sato et al., Biophys. Physicobiol. Vol. 18, 116 (2021) |
DNA nanotechnology provides an avenue for the construction of programmable
dynamic molecular systems |
3 |
1566 |
| Teppei Sugimoto et al., Biophys. Physicobiol. Vol. 18, 108
(2021) |
Role of Thr82 for the unique photochemistry of TAT rhodopsin |
9 |
945 |
| Ryota Kojima et al., Biophys. Physicobiol. Vol. 18, 96 (2021) |
A measure for the identification of preferred particle orientations in
cryo-electron microscopy data: A simulation study |
3 |
849 |
| Seine A. Shintani, Biophys. Physicobiol. Vol. 18, 85 (2021) |
Effects of high-pressure treatment on the structure and function of
myofibrils |
6 |
783 |
| Maki Kawasaki et al., Biophys. Physicobiol. Vol. 18, 78 (2021) |
DNA-binding function of c-Myb R2R3 around thermal denaturation temperature |
4 |
733 |
| Katsumi Omagari et al., Biophys. Physicobiol. Vol. 18, 67 (2021) |
Application of fluorescent-based technology detecting protein-protein
interactions to monitor the binding of hepatitis B virus X protein to
DNA-damage-binding protein 1 |
1 |
750 |
| Masahiro Kinoshita, Biophys. Physicobiol. Vol. 18, 60 (2021) |
On the functioning mechanism of an ATP-driven molecular motor |
3 |
824 |
| Yasumichi Takase et al., Biophys. Physicobiol. Vol. 18, 50
(2021) |
Structure elements can be predicted using the contact volume among protein
residues |
1 |
817 |
| Shunpei Hanai et al., Biophys. Physicobiol. Vol. 18, 40 (2021) |
Light-induced difference FTIR spectroscopy of primate blue-sensitive
visual pigment at 163 K |
6 |
855 |
| Yuta Kyosei et al., Biophys. Physicobiol. Vol. 18, 28 (2021) |
Antigen tests for COVID-19 |
33 |
2691 |
| Aya Okuda et al., Biophys. Physicobiol. Vol. 18, 16 (2021) |
Deuteration Aiming for Neutron Scattering |
10 |
1296 |
| Mikio Kataoka et al., Biophys. Physicobiol. Vol. 18, 13 (2021) |
Expanding horizons of biosciences by light-control |
0 |
633 |
| Ryo Yoshizawa et al., Biophys. Physicobiol. Vol. 18, 1 (2021) |
Biphasic spatiotemporal regulation of GRB2 dynamics by p52SHC for
transient RAS activation |
8 |
904 |
| Junichi Higo et al., Biophys. Physicobiol. Vol. 17, 161 (2020) |
GA-guided mD-VcMD: A genetic-algorithm-guided method for multi-dimensional
virtual-system coupled molecular dynamics |
9 |
816 |
| Masaru Hoshino, Biophys. Physicobiol. Vol. 17, 159 (2020) |
Letter to the Editor: A still unresolved mystery in the interaction
between intrinsically disordered proteins: How do they recognize multiple
target proteins? A commentary on “No folding upon binding of intrinsically
disordered proteins: Still interesting but not unique and novel. by Sigalov,
A. B., Biophysics and Physicobiology 17, 156–158 (2020). DOI:
10.2142/biophysico.BSJ-2020025” |
1 |
322 |
| Alexander B. Sigalov, Biophys. Physicobiol. Vol. 17, 156 (2020) |
Letter to the Editor: No folding upon binding of intrinsically disordered
proteins: Still interesting but not unique and novel. A commentary on “A
novel mode of interaction between intrinsically disordered proteins. by
Hibino, E. and Hoshino, M., Biophysics and Physicobiology 17, 86–93 (2020).
DOI: 10.2142/biophysico.BSJ-2020012” |
2 |
355 |
| Munehito Arai et al., Biophys. Physicobiol. Vol. 17, 155 (2020) |
Editorial |
0 |
298 |
| Hiroto Anbo et al., Biophys. Physicobiol. Vol. 17, 147 (2020) |
NeProc predicts binding segments in intrinsically disordered regions
without learning binding region sequences |
1 |
705 |
| Kota Kasahara et al., Biophys. Physicobiol. Vol. 17, 140 (2020) |
myPresto/omegagene 2020: a molecular dynamics simulation engine for
virtual-system coupled sampling |
11 |
790 |
| Yuki Kogo et al., Biophys. Physicobiol. Vol. 17, 132 (2020) |
Rapid differentiation of human dental pulp stem cells to neuron-like cells
by high K+ stimulation |
14 |
849 |
| Akihiko Ishijima et al., Biophys. Physicobiol. Vol. 17, 130
(2020) |
Information physics of living matters |
0 |
856 |
| Kazuma Yasuhara et al., Biophys. Physicobiol. Vol. 17, 125
(2020) |
New lipid membrane technologies for reconstitution, analysis, and
utilization of ‘living’ membrane proteins |
2 |
842 |
| Ryuma Sato et al., Biophys. Physicobiol. Vol. 17, 113 (2020) |
Theoretical insights into the DNA repair function of Arabidopsis thaliana
cryptochrome-DASH |
4 |
827 |
| Jia-Siang Sum et al., Biophys. Physicobiol. Vol. 17, 103 (2020) |
Spectroscopic and structural characteristics of a dual-light sensor
protein, PYP-phytochrome related protein |
1 |
698 |
| Keiko Nonomura et al., Biophys. Physicobiol. Vol. 17, 100 (2020) |
Cell mechanosensing underlies homeostasis of multicellular systems |
2 |
601 |
| Takeharu Nagai et al., Biophys. Physicobiol. Vol. 17, 98 (2020) |
Detection of singularity in immunity and cancer by novel imaging
techniques |
2 |
751 |
| Hitomi Sawai et al., Biophys. Physicobiol. Vol. 17, 94 (2020) |
Integrated bio-metal science: New frontiers of bio-metal science opened
with cutting-edge techniques |
0 |
702 |
| Emi Hibino et al., Biophys. Physicobiol. Vol. 17, 86 (2020) |
A novel mode of interaction between intrinsically disordered proteins |
8 |
1065 |
| Daniel Dai et al., Biophys. Physicobiol. Vol. 17, 71 (2020) |
Identification and mapping of central pair proteins by proteomic analysis |
23 |
1456 |
| Yujiro Nagasaka et al., Biophys. Physicobiol. Vol. 17, 59 (2020) |
Gate-keeper of ion transport—a highly conserved helix-3 tryptophan in a
channelrhodopsin chimera, C1C2/ChRWR |
4 |
977 |
| Akihiko Nakamura et al., Biophys. Physicobiol. Vol. 17, 51
(2020) |
Crystalline chitin hydrolase is a burnt-bridge Brownian motor |
6 |
1039 |
| Satoshi Toda, Biophys. Physicobiol. Vol. 17, 42 (2020) |
Synthetic tissue engineering: Programming multicellular self-organization
by designing customized cell-cell communication |
6 |
1396 |
| Yudai Yamaoki et al., Biophys. Physicobiol. Vol. 17, 36 (2020) |
Observation of nucleic acids inside living human cells by in-cell NMR
spectroscopy |
9 |
973 |
| Damien Hall, Biophys. Physicobiol. Vol. 17, 30 (2020) |
A simple method for modeling amyloid kinetics featuring position biased
fiber breakage |
4 |
802 |
| Takuya Yoshizawa et al., Biophys. Physicobiol. Vol. 17, 25
(2020) |
Effect of nuclear import receptors on liquid–liquid phase separation |
5 |
1344 |
| Natsuki Mukuta et al., Biophys. Physicobiol. Vol. 17, 14 (2020) |
Potential energy landscape and thermodynamic transitions of coarse-grained
protein models revealed by the multicanonical generalized hybrid Monte Carlo
method |
2 |
868 |
| Shumpei Matsuno et al., Biophys. Physicobiol. Vol. 17, 2 (2020) |
Multidomain protein structure prediction using information about residues
interacting on multimeric protein interfaces |
3 |
842 |
| Haruki Nakamura, Biophys. Physicobiol. Vol. 17, 1 (2020) |
Editorial |
0 |
507 |
| Lihsin Lee, Biophys. Physicobiol. Vol. 16, 490 (2019) |
Bohr equation and the lost allosteric Bohr effects in symmetry |
2 |
605 |
| Itaru Onishi et al., Biophys. Physicobiol. Vol. 16, 485 (2019) |
A tool written in Scala for preparation and analysis in MD simulation and
3D-RISM calculation of biomolecules |
1 |
541 |
| Bang-Chieh Huang et al., Biophys. Physicobiol. Vol. 16, 473
(2019) |
Molecular dynamics simulations and linear response theories jointly
describe biphasic responses of myoglobin relaxation and reveal evolutionarily
conserved frequent communicators |
4 |
666 |
| Nobuhiko Kajinami et al., Biophys. Physicobiol. Vol. 16, 466
(2019) |
Polymer brush in articular cartilage lubrication: Nanoscale modelling and
simulation |
9 |
643 |
| Teikichi Ikura et al., Biophys. Physicobiol. Vol. 16, 452 (2019) |
Mutational effects of Cys113 on structural dynamics of Pin1 |
3 |
552 |
| Jean-François Gibrat, Biophys. Physicobiol. Vol. 16, 444 (2019) |
On the use of algebraic topology concepts to check the consistency of
genome assembly |
0 |
526 |
| Atsushi Tokuhisa, Biophys. Physicobiol. Vol. 16, 430 (2019) |
Characterization of X-ray diffraction intensity function from a biological
molecule for single particle imaging |
2 |
436 |
| Yutaka Maruyama et al., Biophys. Physicobiol. Vol. 16, 407
(2019) |
Analysis of molecular dynamics simulations of 10-residue peptide,
chignolin, using statistical mechanics: Relaxation mode analysis and
three-dimensional reference interaction site model theory |
7 |
919 |
| Takeshi Kawabata, Biophys. Physicobiol. Vol. 16, 391 (2019) |
Detection of cave pockets in large molecules: Spaces into which internal
probes can enter, but external probes from outside cannot |
27 |
677 |
| Toru Ekimoto et al., Biophys. Physicobiol. Vol. 16, 377 (2019) |
Combination of coarse-grained molecular dynamics simulations and
small-angle X-ray scattering experiments |
3 |
820 |
| Miki Nakano et al., Biophys. Physicobiol. Vol. 16, 367 (2019) |
Parameter optimization for 3D-reconstruction from XFEL diffraction
patterns based on Fourier slice matching |
2 |
530 |
| Yuko Okamoto, Biophys. Physicobiol. Vol. 16, 344 (2019) |
Protein structure predictions by enhanced conformational sampling methods |
4 |
782 |
| Hidetoshi Kono et al., Biophys. Physicobiol. Vol. 16, 337 (2019) |
Free energy profile for unwrapping outer superhelical turn of CENP-A
nucleosome |
8 |
575 |
| Ruth Veevers et al., Biophys. Physicobiol. Vol. 16, 328 (2019) |
Methodological improvements for the analysis of domain movements in large
biomolecular complexes |
33 |
1025 |
| Takahisa Yamato et al., Biophys. Physicobiol. Vol. 16, 322
(2019) |
Normal mode analysis and beyond |
12 |
1086 |
| Ai Shinobu et al., Biophys. Physicobiol. Vol. 16, 310 (2019) |
Building a macro-mixing dual‑basin Gō model using the Multistate Bennett
Acceptance Ratio |
5 |
766 |
| Rie Koga et al., Biophys. Physicobiol. Vol. 16, 304 (2019) |
Consistency principle for protein design |
10 |
1182 |
| Kazuhiro Takemura et al., Biophys. Physicobiol. Vol. 16, 295
(2019) |
More efficient screening of protein-protein complex model structures for
reducing the number of candidates |
4 |
698 |
| Arina Afanasyeva et al., Biophys. Physicobiol. Vol. 16, 287
(2019) |
Prediction of the secondary structure of short DNA aptamers |
29 |
1717 |
| Ryotaro Koike et al., Biophys. Physicobiol. Vol. 16, 280 (2019) |
All Atom Motion Tree detects side chain-related motions and their coupling
with domain motion in proteins |
2 |
527 |
| Mikio Kataoka et al., Biophys. Physicobiol. Vol. 16, 274 (2019) |
Mechanism of the light-driven proton pump of bacteriorhodopsin based on
the consistency principle |
6 |
635 |
| Sarbani Chattopadhyaya et al., Biophys. Physicobiol. Vol. 16,
264 (2019) |
A collective motion description of tubulin βT7 loop dynamics |
9 |
526 |
| Nobuhiro Go, Biophys. Physicobiol. Vol. 16, 256 (2019) |
Snake cube puzzle and protein folding |
4 |
1758 |
| Shoji Takada, Biophys. Physicobiol. Vol. 16, 248 (2019) |
Gō model revisited |
41 |
1609 |
| Yasumasa Joti et al., Biophys. Physicobiol. Vol. 16, 240 (2019) |
Cancellation between auto- and mutual correlation contributions of
protein/water dynamics in terahertz time-domain spectra |
2 |
482 |
| Kei Moritsugu et al., Biophys. Physicobiol. Vol. 16, 232 (2019) |
Allosteric response to ligand binding: Molecular dynamics study of the
N-terminal domains in IP3 receptor |
5 |
495 |
| Hiroshi Wako et al., Biophys. Physicobiol. Vol. 16, 220 (2019) |
Dynamic properties of oligomers that characterize low-frequency normal
modes |
3 |
470 |
| Hiroshi Nakagawa et al., Biophys. Physicobiol. Vol. 16, 213
(2019) |
How can we derive hydration water dynamics with incoherent neutron
scattering and molecular dynamics simulation? |
7 |
630 |
| Shigeru Endo et al., Biophys. Physicobiol. Vol. 16, 205 (2019) |
Normal mode analysis calculation for a full-atom model with a smaller
number of degrees of freedom for huge protein molecules |
0 |
478 |
| Tatsushi Nishimoto et al., Biophys. Physicobiol. Vol. 16, 196
(2019) |
Replica exchange molecular dynamics simulation study on the mechanism of
desiccation-induced structuralization of an intrinsically disordered peptide
as a model of LEA proteins |
6 |
743 |
| Nobuyuki Matubayasi et al., Biophys. Physicobiol. Vol. 16, 185
(2019) |
Energetics of cosolvent effect on peptide aggregation |
5 |
807 |
| Katsuhide Yutani et al., Biophys. Physicobiol. Vol. 16, 176
(2019) |
Confirmation of the formation of salt bridges in the denatured state of
CutA1 protein using molecular dynamics simulations |
4 |
520 |
| Mikio Kataoka et al., Biophys. Physicobiol. Vol. 16, 173 (2019) |
Forewords to the special issue “Progress of theoretical and computational
biophysics—in honor of Professor Nobuhiro Go’s outstanding contribution on
the occasion of his 80th birthday” |
0 |
495 |
| Kei Shimizu et al., Biophys. Physicobiol. Vol. 16, 167 (2019) |
Food deprivation changes chemotaxis behavior in Caenorhabditis elegans |
7 |
769 |
| Takeo Yamaguchi et al., Biophys. Physicobiol. Vol. 16, 158
(2019) |
ATP effects on response of human erythrocyte membrane to high pressure |
11 |
512 |
| Junichi Kaneshiro et al., Biophys. Physicobiol. Vol. 16, 147
(2019) |
Second harmonic generation polarization microscopy as a tool for protein
structure analysis |
7 |
1262 |
| Atsuko Nakanishi et al., Biophys. Physicobiol. Vol. 16, 140
(2019) |
Cryo-EM studies of the rotary H+-ATPase/synthase from Thermus thermophilus |
8 |
957 |
| Etsuro Ito et al., Biophys. Physicobiol. Vol. 16, 132 (2019) |
A novel role of oxytocin: Oxytocin-induced well-being in humans |
36 |
2454 |
| Kei Odai et al., Biophys. Physicobiol. Vol. 16, 127 (2019) |
Ab-initio study of pyrrole ring deformation in the indole group of 5-HT
interacting with water molecules |
3 |
475 |
| Koichi Nakajo, Biophys. Physicobiol. Vol. 16, 121 (2019) |
Gating modulation of the KCNQ1 channel by KCNE proteins studied by
voltage-clamp fluorometry |
5 |
780 |
| Yosuke Tashiro et al., Biophys. Physicobiol. Vol. 16, 114 (2019) |
Targeted delivery using membrane vesicles in prokaryotes |
15 |
1095 |
| Atsushi Matsumoto, Biophys. Physicobiol. Vol. 16, 108 (2019) |
Dynamic analysis of ribosome by a movie made from many three-dimensional
electron-microscopy density maps |
0 |
709 |
| Hiroshi Koyama et al., Biophys. Physicobiol. Vol. 16, 89 (2019) |
Biophysics in oviduct: Planar cell polarity, cilia, epithelial fold and
tube morphogenesis, egg dynamics |
40 |
1318 |
| Yuhi Hosoe et al., Biophys. Physicobiol. Vol. 16, 80 (2019) |
Structural and functional properties of Grb2 SH2 dimer in CD28 binding |
15 |
922 |
| Mika Sakamoto et al., Biophys. Physicobiol. Vol. 16, 68 (2019) |
Relationship between conformation shift and disease related variation
sites in ATP-binding cassette transporter proteins |
5 |
803 |
| Kenichi Kouyama et al., Biophys. Physicobiol. Vol. 16, 59 (2019) |
Single-particle analysis of full-length human poly(ADP-ribose) polymerase
1 |
8 |
984 |
| Kunihiko Gekko, Biophys. Physicobiol. Vol. 16, 41 (2019) |
Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy
in structural biology: an overview |
12 |
1080 |
| Shuya Ishii et al., Biophys. Physicobiol. Vol. 16, 28 (2019) |
Functional significance of HCM mutants of tropomyosin, V95A and D175N,
studied with in vitro motility assays |
6 |
914 |
| Shohei Konno et al., Biophys. Physicobiol. Vol. 16, 18 (2019) |
Uncovering dehydration in cytochrome c refolding from urea- and guanidine
hydrochloride-denatured unfolded state by high pressure spectroscopy |
5 |
852 |
| Hironobu Nogucci, Biophys. Physicobiol. Vol. 16, 9 (2019) |
Dynamic and static analyses of glass-like properties of three-dimensional
tissues |
0 |
693 |
| Kentaro Ozawa et al., Biophys. Physicobiol. Vol. 16, 1 (2019) |
Millimeter-sized belt-like pattern formation of actin filaments in
solution by interacting with surface myosin in vitro |
3 |
1008 |
| Marzieh Alishahi et al., Biophys. Physicobiol. Vol. 15, 255
(2018) |
Forced diffusion of water molecules through aquaporin-5 biomembrane; a
molecular dynamics study |
7 |
698 |
| Masahiro Nishimura et al., Biophys. Physicobiol. Vol. 15, 251
(2018) |
Crystallographic analysis of the overlapping dinucleosome as a novel
chromatin unit |
0 |
485 |
| Shuji Kawasaki et al., Biophys. Physicobiol. Vol. 15, 235 (2018) |
Data analytic study of the homothermal maintenance mechanism of Skunk
Cabbage: Capturing pre-equilibrium characteristics using extended poisson
model |
0 |
659 |
| Takeharu Sekiguchi et al., Biophys. Physicobiol. Vol. 15, 229
(2018) |
Fluorescent nanodiamonds as a robust temperature sensor inside a single
cell |
58 |
2124 |
| Takayoshi Tsubo et al., Biophys. Physicobiol. Vol. 15, 214
(2018) |
Verification of the effect of the axon fluid as a highly dielectric medium
in the high-speed conduction of action potentials using a novel axon
equivalent circuit |
5 |
558 |
| Vrushali C. Hingane et al., Biophys. Physicobiol. Vol. 15, 204
(2018) |
Inhibition of crude viper venom action by silver nanoparticles: A
biophysical and biochemical study |
11 |
779 |
| Hiroyuki Kitahata et al., Biophys. Physicobiol. Vol. 15, 196
(2018) |
Mathematical approach to unpinning of spiral waves anchored to an obstacle
with high-frequency pacing |
2 |
511 |
| Kazuhiro Maeshima et al., Biophys. Physicobiol. Vol. 15, 189
(2018) |
Chromatin as a nuclear spring |
24 |
1076 |
| Keiichi Kojima et al., Biophys. Physicobiol. Vol. 15, 179 (2018) |
Mutational analysis of the conserved carboxylates of anion
channelrhodopsin-2 (ACR2) expressed in Escherichia coli and their roles in
anion transport |
11 |
786 |
| Hiroyuki Terashima et al., Biophys. Physicobiol. Vol. 15, 173
(2018) |
Novel insight into an energy transduction mechanism of the bacterial
flagellar type III protein export |
3 |
589 |
| Ryosuke Iwai et al., Biophys. Physicobiol. Vol. 15, 165 (2018) |
Influence of various parameters in the replica-exchange molecular dynamics
method: Number of replicas, replica-exchange frequency, and thermostat
coupling time constant |
6 |
842 |
| Tadashi Nakashima et al., Biophys. Physicobiol. Vol. 15, 159
(2018) |
Earthworm individualities when facing a conflict between turn alternation
and aversive learning |
6 |
849 |
| Fumio Oosawa, Biophys. Physicobiol. Vol. 15, 151 (2018) |
My various thoughts on actin |
2 |
875 |
| Sumita Das et al., Biophys. Physicobiol. Vol. 15, 136 (2018) |
Single-molecular and ensemble-level oscillations of cyanobacterial
circadian clock |
5 |
707 |
| Hitoshi Aonuma et al., Biophys. Physicobiol. Vol. 15, 129 (2018) |
Comparison of brain monoamine content in three populations of Lymnaea that
correlates with taste-aversive learning ability |
12 |
503 |
| Yoshiaki Kinosita et al., Biophys. Physicobiol. Vol. 15, 121
(2018) |
Cross-kymography analysis to simultaneously quantify the function and
morphology of the archaellum |
5 |
641 |
| Hiroyuki Iwamoto, Biophys. Physicobiol. Vol. 15, 111 (2018) |
Effects of myosin inhibitors on the X-ray diffraction patterns of relaxed
and calcium-activated rabbit skeletal muscle fibers |
12 |
649 |
| Masami Ikeda et al., Biophys. Physicobiol. Vol. 15, 104 (2018) |
SEVENS: a database for comprehensive GPCR genes obtained from genomes |
3 |
1110 |
| Akiko Higuchi et al., Biophys. Physicobiol. Vol. 15, 94 (2018) |
iMusta4SLC: Database for the structural property and variations of solute
carrier transporters |
8 |
709 |
| Miki H. Maeda et al., Biophys. Physicobiol. Vol. 15, 87 (2018) |
Chemical curation to improve data accuracy: recent development of the
3DMET database |
3 |
503 |
| Kei Yura, Biophys. Physicobiol. Vol. 15, 86 (2018) |
Preface of Special Issue “Databases” |
0 |
464 |
| Shigeki Mitaku et al., Biophys. Physicobiol. Vol. 15, 75 (2018) |
Biological meaning of “habitable zone” in nucleotide composition space |
4 |
638 |
| Keisuke Arikawa, Biophys. Physicobiol. Vol. 15, 58 (2018) |
Theoretical framework for analyzing structural compliance properties of
proteins |
2 |
638 |
| Ken H. Nagai, Biophys. Physicobiol. Vol. 15, 51 (2018) |
Collective motion of rod-shaped self-propelled particles through collision |
7 |
1361 |
| Hiroki Nagashima et al., Biophys. Physicobiol. Vol. 15, 45
(2018) |
Magnetic structure of manganese cluster in photosystem II investigated by
electron paramagnetic resonance |
5 |
742 |
| Mitsuhiko Odera et al., Biophys. Physicobiol. Vol. 15, 33 (2018) |
Molecular dynamics simulation study on the structural instability of the
most common cystic fibrosis-associated mutant ΔF508-CFTR |
14 |
1070 |
| Takashi Fujii et al., Biophys. Physicobiol. Vol. 15, 28 (2018) |
Evidence for the hook supercoiling mechanism of the bacterial flagellum |
12 |
796 |
| Ryuma Sato et al., Biophys. Physicobiol. Vol. 15, 18 (2018) |
The binding structure and affinity of photodamaged duplex DNA with members
of the photolyase/cryptochrome family: A computational study |
6 |
695 |
| Yoichi Nakatani et al., Biophys. Physicobiol. Vol. 15, 8 (2018) |
Quantitative analyses of the equilibria among DNA complexes of a
blue-light-regulated bZIP module, Photozipper |
5 |
670 |
| Akira Kitamura et al., Biophys. Physicobiol. Vol. 15, 1 (2018) |
Determination of diffusion coefficients in live cells using fluorescence
recovery after photobleaching with wide-field fluorescence microscopy |
22 |
1362 |
| Daisuke Miyashiro et al., Biophys. Physicobiol. Vol. 14, 207
(2017) |
Radial stiffness characteristics of the overlap regions of sarcomeres in
isolated skeletal myofibrils in pre-force generating state |
4 |
526 |
| Hiroshi Hashimoto et al., Biophys. Physicobiol. Vol. 14, 199
(2017) |
Structural basis for the molecular interactions in DNA damage tolerances |
3 |
528 |
| Hiroyuki Terashima et al., Biophys. Physicobiol. Vol. 14, 191
(2017) |
Structural differences in the bacterial flagellar motor among bacterial
species |
45 |
1260 |
| Kazuho Yoshida et al., Biophys. Physicobiol. Vol. 14, 183 (2017) |
Chimeric microbial rhodopsins for optical activation of Gs-proteins |
3 |
600 |
| Shota Kondo et al., Biophys. Physicobiol. Vol. 14, 173 (2017) |
Analysis of the GTPase motif of FlhF in the control of the number and
location of polar flagella in Vibrio alginolyticus |
15 |
534 |
| Naoki Arai et al., Biophys. Physicobiol. Vol. 14, 161 (2017) |
Analysis of an ATP-induced conformational transition of ABC transporter
MsbA using a coarse-grained model |
2 |
556 |
| Eiji Yamamoto, Biophys. Physicobiol. Vol. 14, 153 (2017) |
Computational and theoretical approaches for studies of a lipid
recognition protein on biological membranes |
3 |
749 |
| Toshifumi Kumai, Biophys. Physicobiol. Vol. 14, 147 (2017) |
Isn’t there an inductance factor in the plasma membrane of nerves? |
8 |
570 |
| Ayumi Hashimoto et al., Biophys. Physicobiol. Vol. 14, 137
(2017) |
The change of picrotoxin-induced epileptiform discharges to the beta
oscillation by carbachol in rat hippocampal slices |
9 |
725 |
| Mikihiro Shibata et al., Biophys. Physicobiol. Vol. 14, 127
(2017) |
High-speed atomic force microscopy imaging of live mammalian cells |
39 |
1669 |
| Hiroaki Machiyama et al., Biophys. Physicobiol. Vol. 14, 119
(2017) |
The use of a genetically encoded molecular crowding sensor in various
biological phenomena |
11 |
1032 |
| Yutaro Yamada et al., Biophys. Physicobiol. Vol. 14, 111 (2017) |
Demonstration of correlative atomic force and transmission electron
microscopy using actin cytoskeleton |
3 |
1063 |
| Akira R. Kinjo, Biophys. Physicobiol. Vol. 14, 99 (2017) |
Monte Carlo simulation of a statistical mechanical model of multiple
protein sequence alignment |
2 |
708 |
| Souhei Sakata et al., Biophys. Physicobiol. Vol. 14, 85 (2017) |
Domain-to-domain coupling in voltage-sensing phosphatase |
5 |
870 |
| Ryo Yoshizawa et al., Biophys. Physicobiol. Vol. 14, 75 (2017) |
Single-molecule fluorescence imaging of RalGDS on cell surfaces during
signal transduction from Ras to Ral |
17 |
866 |
| Kotomi Shibata et al., Biophys. Physicobiol. Vol. 14, 67 (2017) |
Mutations in the SH1 helix alter the thermal properties of myosin II |
0 |
739 |
| Yumeka Yamauchi et al., Biophys. Physicobiol. Vol. 14, 57 (2017) |
Molecular properties of a DTD channelrhodopsin from Guillardia theta |
35 |
1099 |
| Jun Tamogami et al., Biophys. Physicobiol. Vol. 14, 49 (2017) |
Existence of two O-like intermediates in the photocycle of Acetabularia
rhodopsin II, a light-driven proton pump from a marine alga |
6 |
743 |
| Noriyo Mitome et al., Biophys. Physicobiol. Vol. 14, 41 (2017) |
Identification of aqueous access residues of the sodium half channel in
transmembrane helix 5 of the Fo-a subunit of Propionigenium modestum ATP
synthase |
4 |
835 |
| Yohei Murakami et al., Biophys. Physicobiol. Vol. 14, 29 (2017) |
Model-based control of the temporal patterns of intracellular signaling in
silico |
2 |
789 |
| Kazuki Takahashi et al., Biophys. Physicobiol. Vol. 14, 23
(2017) |
Enhanced mRNA-protein fusion efficiency of a single-domain antibody by
selection of mRNA display with additional random sequences in the terminal
translated regions |
6 |
973 |
| Alemeh Zamani et al., Biophys. Physicobiol. Vol. 14, 13 (2017) |
Kinetic characteristics of chimeric channelrhodopsins implicate the
molecular identity involved in desensitization |
7 |
857 |
| Kazuya Suzuki et al., Biophys. Physicobiol. Vol. 14, 1 (2017) |
Mechanical properties of spindle poles are symmetrically balanced |
0 |
826 |
| Keitaro Shibata et al., Biophys. Physicobiol. Vol. 13, 321
(2016) |
Actin binding domain of filamin distinguishes posterior from anterior
actin filaments in migrating Dictyostelium cells |
7 |
738 |
| Ryuma Sato et al., Biophys. Physicobiol. Vol. 13, 311 (2016) |
Theoretical analyses on a flipping mechanism of UV-induced DNA
damage |
9 |
737 |
| Shigeki Mitaku et al., Biophys. Physicobiol. Vol. 13, 305 (2016) |
What parameters characterize “life”? |
4 |
598 |
| Motonori Ota et al., Biophys. Physicobiol. Vol. 13, 295 (2016) |
Itinerary profiling to analyze a large number of protein-folding
trajectories |
3 |
568 |
| Masaki Sasai et al., Biophys. Physicobiol. Vol. 13, 281 (2016) |
Cooperativity and modularity in protein folding |
6 |
880 |
| Hiroshi Wako et al., Biophys. Physicobiol. Vol. 13, 263 (2016) |
Characterization of protein folding by a Φ-value calculation with a
statistical-mechanical model |
3 |
747 |
| Yukio Kobayashi, Biophys. Physicobiol. Vol. 13, 251 (2016) |
Statistical mechanics of protein structural transitions: Insights from the
island model |
3 |
691 |
| Mitiko Go, Biophys. Physicobiol. Vol. 13, 249 (2016) |
Professor Nobuhiko Saitô’s contribution to statistical mechanics of
biopolymers |
1 |
476 |
| Kei Yura, Biophys. Physicobiol. Vol. 13, 245 (2016) |
Obituary: Nobuhiko Saitô, a man who understood protein folding in his own
way |
2 |
572 |
| Kei Yura et al., Biophys. Physicobiol. Vol. 13, 243 (2016) |
Memorial Issue for Professor Nobuhiko Saitô |
0 |
458 |
| Yoshihiko Furuike et al., Biophys. Physicobiol. Vol. 13, 235
(2016) |
Accelerating in vitro studies on circadian clock systems using an
automated sampling device |
13 |
720 |
| Yasuhiro Onoue, et al., Biophys. Physicobiol. Vol. 13, 227
(2016) |
Domain-based biophysical characterization of the structural and thermal
stability of FliG, an essential rotor component of the Na+-driven flagellar
motor |
5 |
630 |
| Koutaro Nakagome et al., Biophys. Physicobiol. Vol. 13, 217
(2016) |
Model simulation of the SPOC wave in a bundle of striated myofibrils |
7 |
668 |
| Kota Kasahara et al., Biophys. Physicobiol. Vol. 13, 209 (2016) |
myPresto/omegagene: a GPU-accelerated molecular dynamics simulator
tailored for enhanced conformational sampling methods with a non-Ewald
electrostatic scheme |
27 |
1119 |
| Oanh T. P. Kim, Biophys. Physicobiol. Vol. 13, 207 (2016) |
Erratum: In silico studies for the interaction of tumor necrosis
factor-alpha (TNF-α) with different saponins from Vietnamese ginseng (Panax
vietnamesis) [Biophysics and Physicobiology, Vol.13, pp.173-180 (2016)] |
0 |
341 |
| Masaaki Kotera et al., Biophys. Physicobiol. Vol. 13, 195 (2016) |
Metabolic pathway reconstruction strategies for central metabolism and
natural product biosynthesis |
14 |
1218 |
| Takako Sakano et al., Biophys. Physicobiol. Vol. 13, 181 (2016) |
Molecular dynamics analysis to evaluate docking pose prediction |
48 |
1379 |
| Oanh T. P. Kim et al., Biophys. Physicobiol. Vol. 13, 173 (2016) |
In silico studies for the interaction of tumor necrosis factor-alpha
(TNF-α) with different saponins from Vietnamese ginseng (Panax
vietnamesis) |
28 |
1208 |
| Hiroo Imai et al., Biophys. Physicobiol. Vol. 13, 165 (2016) |
Amino acid residues of bitter taste receptor TAS2R16 that determine
sensitivity in primates to β-glycosides |
7 |
914 |
| Kazunori D et al., Biophys. Physicobiol. Vol. 13, 157 (2016) |
Structural characterization of single nucleotide variants at ligand
binding sites and enzyme active sites of human proteins |
7 |
755 |
| Tatsuya Okuno et al., Biophys. Physicobiol. Vol. 13, 149 (2016) |
Importance of consensus region of multiple-ligand templates in a virtual
screening method |
3 |
552 |
| Tsukasa Nakamura et al., Biophys. Physicobiol. Vol. 13, 139
(2016) |
Effects of the difference in similarity measures on the comparison of
ligand-binding pockets using a reduced vector representation of pockets |
3 |
613 |
| Masayuki Oda et al., Biophys. Physicobiol. Vol. 13, 135 (2016) |
Effects of substrate conformational strain on binding kinetics of
catalytic antibodies |
2 |
597 |
| Yuka Suzuki et al., Biophys. Physicobiol. Vol. 13, 127 (2016) |
Conformational shift in the closed state of GroEL induced by ATP-binding
triggers a transition to the open state |
4 |
737 |
| Junko Taguchi et al., Biophys. Physicobiol. Vol. 13, 117 (2016) |
Dynamic profile analysis to characterize dynamics-driven allosteric sites
in enzymes |
7 |
609 |
| Nobuyuki Uchikoga et al., Biophys. Physicobiol. Vol. 13, 105
(2016) |
Specificity of broad protein interaction surfaces for proteins with
multiple binding partners |
5 |
673 |
| Georgios Iakovou et al., Biophys. Physicobiol. Vol. 13, 97
(2016) |
Determination of locked interfaces in biomolecular complexes using
Haptimol_RD |
6 |
610 |
| Kentaro Ishii et al., Biophys. Physicobiol. Vol. 13, 87 (2016) |
Mass spectrometric analysis of protein–ligand interactions |
37 |
1436 |
| Kei Yura, Biophys. Physicobiol. Vol. 13, 85 (2016) |
Preface of Special Issue “Protein-Ligand Interactions” |
1 |
585 |
| Wataru Tanaka et al., Biophys. Physicobiol. Vol. 13, 77 (2016) |
Molecular mechanisms of substrate specificities of uridine-cytidine
kinase |
9 |
774 |
| Akihiro Okamoto et al., Biophys. Physicobiol. Vol. 13, 71 (2016) |
Cation-limited kinetic model for microbial extracellular electron
transport via an outer membrane cytochrome C complex |
11 |
1357 |
| Ryo Iizuka et al., Biophys. Physicobiol. Vol. 13, 63 (2016) |
Chaperonin GroEL uses asymmetric and symmetric reaction cycles in response
to the concentration of non-native substrate proteins |
6 |
1031 |
| Akira R. Kinjo, Biophys. Physicobiol. Vol. 13, 45 (2016) |
A unified statistical model of protein multiple sequence alignment
integrating direct coupling and insertions |
5 |
840 |
| Ichiro Yamato et al., Biophys. Physicobiol. Vol. 13, 37 (2016) |
Operating principles of rotary molecular motors: differences between F1
and V1 motors |
7 |
860 |
| Yu Takano et al., Biophys. Physicobiol. Vol. 13, 27 (2016) |
Density functional study of molecular interactions in secondary structures
of proteins |
19 |
847 |
| Hitomi Komatsu et al., Biophys. Physicobiol. Vol. 13, 13 (2016) |
Genetic analysis of revertants isolated from the rod-fragile fliF mutant
of Salmonella |
10 |
1086 |
| Yuki Nakamura et al., Biophys. Physicobiol. Vol. 13, 1 (2016) |
Switching of the positive feedback for RAS activation by a concerted
function of SOS membrane association domains |
10 |
1250 |
| Tatsuhito Matsuo et al., Biophys. Physicobiol. Vol. 12, 145
(2015) |
Structures of the troponin core domain containing the
cardiomyopathy-causing mutants studied by small-angle X-ray scattering |
11 |
652 |
| Daichi Yamada et al., Biophys. Physicobiol. Vol. 12, 139 (2015) |
Structural role of two histidines in the (6-4) photolyase reaction |
7 |
764 |
| Go Watanabe et al., Biophys. Physicobiol. Vol. 12, 131 (2015) |
Analysis of water channels by molecular dynamics simulation of
heterotetrameric sarcosine oxidase |
4 |
779 |
| Marie Kurihara et al., Biophys. Physicobiol. Vol. 12, 121 (2015) |
Microbial rhodopsins: wide distribution, rich diversity and great
potential |
35 |
1188 |
| Akira R. Kinjo, Biophys. Physicobiol. Vol. 12, 117 (2015) |
Liquid-theory analogy of direct-coupling analysis of multiple-sequence
alignment and its implications for protein structure prediction |
1 |
644 |
| Saki Aoto et al., Biophys. Physicobiol. Vol. 12, 103 (2015) |
Case study on the evolution of hetero-oligomer interfaces based on the
differences in paralogous proteins |
2 |
742 |
| Tetsuichi Wazawa et al., Biophys. Physicobiol. Vol. 12, 87
(2015) |
Rotational motion of rhodamine 6G tethered to actin through oligo(ethylene
glycol) linkers studied by frequency-domain fluorescence anisotropy |
2 |
836 |
| Mika Morikawa et al., Biophys. Physicobiol. Vol. 12, 79 (2015) |
Subattomole detection of adiponectin in urine by ultrasensitive ELISA
coupled with thio-NAD cycling |
17 |
849 |
| Yuki Yanagisawa et al., Biophys. Physicobiol. Vol. 12, 69 (2015) |
Time-resolved chemiluminescence of firefly luciferin generated by
dissolving oxygen in deoxygenated dimethyl sulfoxide containing potassium
tert-butoxide |
0 |
615 |
| Takayoshi Tomono et al., Biophys. Physicobiol. Vol. 12, 57
(2015) |
Investigation of glycan evolution based on a comprehensive analysis of
glycosyltransferases using phylogenetic profiling |
6 |
905 |
| Eiji Kanamori et al., Biophys. Physicobiol. Vol. 12, 47 (2015) |
Structural comparison between the open and closed forms of citrate
synthase from Thermus thermophilus HB8 |
7 |
845 |
| Yuji Furutani et al., Biophys. Physicobiol. Vol. 12, 37 (2015) |
Specific interactions between alkali metal cations and the KcsA channel
studied using ATR-FTIR spectroscopy |
12 |
881 |
| Takumi Koshiba, Biophys. Physicobiol. Vol. 12, 31 (2015) |
Protein-protein interactions of mitochondrial-associated protein via
bioluminescence resonance energy transfer |
1 |
675 |
| Hitomi Nakashima et al., Biophys. Physicobiol. Vol. 12, 21
(2015) |
The molecular dynamics of crawling migration in microtubule-disrupted
keratocytes |
4 |
752 |
| Satoru Okuda et al., Biophys. Physicobiol. Vol. 12, 13 (2015) |
Three-dimensional vertex model for simulating multicellular
morphogenesis |
43 |
2259 |
| Koji Oda et al., Biophys. Physicobiol. Vol. 12, 1 (2015) |
Physicochemical origin of high correlation between thermal stability of a
protein and its packing efficiency: a theoretical study for staphylococcal
nuclease mutants |
14 |
919 |
| Saeko Yanaka et al., Biophys. Vol. 11, 103 (2015) |
Revealing the peptide presenting process of human leukocyte antigen
through the analysis of fluctuation |
0 |
2106 |
| Fumihiro Motojima, Biophys. Vol. 11, 93 (2015) |
How do chaperonins fold protein? |
13 |
2506 |
| Masashi K. Kajita et al., Biophys. Vol. 11, 85 (2015) |
Experimental and theoretical bases for mechanisms of antigen
discrimination by T cells |
2 |
2668 |
| Mukaiyama et al., Biophys. Vol. 11, 79 (2015) |
A protocol for preparing nucleotide-free KaiC monomer |
4 |
2323 |
| Watanabe et al., Biophys. Vol. 11, 73 (2015) |
A new antigenic marker specifically labels a subpopulation of the class II
Kenyon cells in the brain of the European honeybee Apis mellifera |
0 |
2294 |
| Fujii et al., Biophys. Vol. 11, 67 (2015) |
In vitro directed evolution of alpha-hemolysin by liposome display |
5 |
4083 |
| Katayama et al., Biophys. Vol. 11, 61 (2015) |
FTIR study of primate color visual pigments |
5 |
2218 |
| Dyakonova et al., Biophys. Vol. 11, 55 (2015) |
The activity of isolated snail neurons controlling locomotion is affected
by glucose |
22 |
2367 |
| Ikezaki et al., Biophys. Vol. 11, 47 (2015) |
Lever arm extension of myosin VI is unnecessary for the adjacent binding
state |
1 |
2453 |
| Wijaya, et al., Biophys. Vol. 11, 39 (2015) |
FTIR study of CPD photolyase with substrate in single strand DNA |
9 |
2643 |
| Ito et al., Biophys. Vol. 11, 33 (2015) |
Thermodynamic implications of high Q10 of thermoTRP channels in living
cells |
34 |
2928 |
| Hsu et al., Biophys. Vol. 11, 25 (2015) |
Role of TRP channels in the induction of heat shock proteins (Hsps) by
heating skin |
17 |
3216 |
| Ho et al., Biophys.
Vol. 11, 17 (2015) |
TRP channels in skin: from physiological implications to clinical
significances |
42 |
4229 |
| Lin et al., Biophys.
Vol. 11, 9 (2015) |
Electrophysiological characteristics of IB4-negative TRPV1-expressing
muscle afferent DRG neurons |
5 |
2546 |
| Ito, Biophys. Vol. 11, 7 (2015) |
Preface of Special Issue “TRP channels: their functional roles in medical
sciences” |
0 |
1110 |
| Yamagishi et al., Biophys. Vol. 11, 1 (2015) |
Effects of serotonin on the heartbeat of pond snails in a hunger state |
12 |
2892 |
| Hiroshi Sunada et al., Biophys. Vol. 10, 121 (2014) |
Electrophysiological characteristics of feeding-related neurons after
taste avoidance Pavlovian conditioning in Lymnaea stagnalis |
10 |
793 |
| Hideki Itoh et al., Biophys. Vol. 10, 109 (2014) |
Microscopic heat pulse-induced calcium dynamics in single WI-38
fibroblasts |
23 |
1064 |
| Ken Nishikawa et al., Biophys. Vol. 10, 99 (2014) |
Cooperation between phenotypic plasticity and genetic mutations can
account for the cumulative selection in evolution |
9 |
993 |
| Nishikawa et al., Biophys. Vol. 10, 89 (2014) |
3-D structural analysis of the crucial intermediate of skeletal muscle
myosin and its role in revised actomyosin cross-bridge cycle |
3 |
726 |
| Takigami et al., Biophys. Vol. 10, 77 (2014) |
Morphological and physiological characteristics of dermal photoreceptors
in Lymnaea stagnalis |
5 |
1059 |
| Fujita et al., Biophys. Vol. 10, 69 (2014) |
Myosin V is a biological Brownian machine |
0 |
1032 |
| Hashimoto, Biophys. Vol. 10, 63 (2014) |
Structural and mutation studies of two DNA demethylation related
glycosylases: MBD4 and TDG |
6 |
962 |
| Sharma et al., Biophys. Vol. 10, 55 (2014) |
Familial clustering of mice consistent to known pedigrees enabled by the
genome profiling (GP) method |
3 |
870 |
| Watabe et al., Biophys. Vol. 10, 49 (2014) |
Ultrasensitive enzyme-linked immunosorbent assay (ELISA) of proteins by
combination with the thio-NAD cycling method |
38 |
1938 |
| Fujiwara et al., Biophys. Vol. 10, 43 (2014) |
Reconstitution of intracellular environments in vitro and in artificial
cells |
14 |
3971 |
| Nakamura et al., Biophys. Vol. 10, 35 (2014) |
Effect of the MotB(D33N) mutation on stator assembly and rotation of the
proton-driven bacterial flagellar motor |
5 |
943 |
| Fujisawa et al., Biophys. Vol. 10, 25 (2014) |
Uncovering the mechanism for selective control of the visible and near-IR
absorption bands in bacteriochlorophylls a, b and g |
1 |
906 |
| Arai et al., Biophys. Vol. 10, 15 (2014) |
Optimal terminal sequences for continuous or serial isothermal
amplification of dsRNA with norovirus RNA replicase |
1 |
1024 |
| Qin et al., Biophys. Vol. 10, 9 (2014) |
α-helix formation rate of oligopeptides at subzero temperatures |
1 |
973 |
| Yamazaki et al., Biophys. Vol. 10, 1 (2014) |
Mapping of the local environmental changes in proteins by cysteine
scanning |
5 |
1319 |
| Yoshioka et al., Biophys. Vol. 9, 183 (2013) |
Physical aspects of sensory transduction on seeing, hearing and
smelling |
6 |
1057 |
| Castillo et al., Biophys. Vol. 9, 173 (2013) |
The C-terminal periplasmic domain of MotB is responsible for
load-dependent control of the number of stators of the bacterial flagellar
motor |
31 |
1160 |
| Fukuda et al., Biophys. Vol. 9, 167 (2013) |
Detection of a protein-bound water vibration of halorhodopsin in aqueous
solution |
7 |
676 |
| Otsuka et al., Biophys. Vol. 9, 161 (2013) |
Increase in cyclic AMP concentration in a cerebral giant interneuron
mimics part of a memory trace for conditioned taste aversion of the pond
snail |
17 |
565 |
| Aoki et al., Biophys. Vol. 9, 149 (2013) |
Single molecule FRET observation of kinesin-1's head-tail interaction on
microtubule |
7 |
989 |
| Ishikawa, Biophys. Vol. 9, 141 (2013) |
3D structure of eukaryotic flagella/cilia by cryo-electron tomography |
3 |
940 |
| Kobayashi et al., Biophys. Vol. 9, 131 (2013) |
Recent structural studies on Dom34/aPelota and Hbs1/aEF1α: important
factors for solving general problems of ribosomal stall in translation |
6 |
607 |
| Furutani et al., Biophys. Vol. 9, 123 (2013) |
Development of a rapid Buffer-exchange system for time-resolved ATR-FTIR
spectroscopy with the step-scan mode |
9 |
957 |
| Kawabata et al., Biophys. Vol. 9, 113 (2013) |
LigandBox: A database for 3D structures of chemical compounds |
26 |
1600 |
| Toyabe et al., Biophys. Vol. 9, 107 (2013) |
Information-to-free-energy conversion: Utilizing thermal fluctuations |
3 |
1108 |
| Matsuo et al., Biophys. Vol. 9, 99 (2013) |
Difference in hydration structures between F-actin and myosin
subfragment-1 detected by small-angle X-ray and neutron scattering |
9 |
858 |
| Toyabe et al., Biophys. Vol. 9, 91 (2013) |
Experimental thermodynamics of single molecular motor |
14 |
1152 |
| Nagata et al., Biophys. Vol. 9, 85 (2013) |
Contribution of a visual pigment absorption spectrum to a visual function:
depth perception in a jumping spider |
1 |
989 |
| Tomisawa et al., Biophys. Vol. 9, 79 (2013) |
A new approach to detect small peptides clearly and sensitively by Western
blotting using a vacuum-assisted detection method |
11 |
1023 |
| Itabashi et al., Biophys. Vol. 9, 73 (2013) |
Responses of chromosome segregation machinery to mechanical perturbations |
2 |
762 |
| Moriya et al., Biophys. Vol. 9, 63 (2013) |
Role of the Dc domain of the bacterial hook protein FlgE in hook assembly
and function |
13 |
785 |
| Kato et al., Biophys. Vol. 9, 57 (2013) |
Crystal structure of channelrhodopsin, a light-gated cation channel - all
cations lead through the monomer - |
7 |
806 |
| Watanabe, Biophys. Vol. 9, 51 (2013) |
Rotary catalysis of FoF1-ATP synthase |
5 |
924 |
| Kinoshita et al., Biophys. Vol. 9, 37 (2013) |
Characterization of the ordered phase formed by sphingomyelin analogues
and cholesterol binary mixtures |
12 |
1033 |
| Nakamura et al., Biophys. Vol. 9, 31 (2013) |
Mechanism of the nucleotidyl-transfer reaction in DNA polymerase revealed
by time-resolved protein crystallography |
7 |
930 |
| Yoshizumi et al., Biophys. Vol. 9, 21 (2013) |
Expression, purification and biochemical characterization of the
cytoplasmic loop of PomA, a stator component of the Na+ driven flagellar
motor |
2 |
705 |
| Maruta et al., Biophys. Vol. 9, 13 (2013) |
Single turnovers of fluorescent ATP bound to bipolar myosin filament
during actin filaments sliding |
2 |
790 |
| Kobayashi et al., Biophys. Vol. 9, 1 (2013) |
Distinct Conformation of ATP Molecule in Solution and on Protein |
19 |
1578 |
| Nishimura et al., Biophys. Vol. 8, 173 (2012) |
Phase dependency of long-term potentiation induction during the
intermittent bursts of carbachol-induced β oscillation in rat hippocampal
slices |
1 |
589 |
| Yoshida, Biophys. Vol. 8, 163 (2012) |
Self-oscillating gels beating like a heart muscle |
16 |
1316 |
| Mitsui et al., Biophys. Vol. 8, 151 (2012) |
Proposed model for the flagellar rotary motor with shear stress
transmission |
0 |
752 |
| Koyama et al., Biophys. Vol. 8, 145 (2012) |
Mechanistic insights from the recent structures of the CRM1 nuclear export
complex and its disassembly intermediate |
5 |
714 |
| Higo et al., Biophys. Vol. 8, 139 (2012) |
Virtual states introduced for overcoming entropic barriers in
conformational space |
10 |
631 |
| Du et al., Biophys. Vol. 8, 127 (2012) |
A scoring function based on solvation thermodynamics for protein structure
prediction |
1 |
1277 |
| Hayashi et al., Biophys. Vol. 8, 115 (2012) |
Full-Quantum chemical calculation of the absorption maximum of
bacteriorhodopsin: a comprehensive analysis of the amino acid residues
contributing to the opsin shift |
5 |
1162 |
| Hayashi et al., Biophys. Vol. 8, 111 (2012) |
Extraction and purification of a luminiferous substance from the luminous
mushroom Mycena chlorophos |
10 |
1275 |
| Eugene et al., Biophys. Vol. 8, 103 (2012) |
Comparative study of the different mechanisms for zinc ion stress sensing
in two cyanobacterial strains, Synechococcus sp. PCC 7942 and Synechocystis
sp. PCC 6803 |
5 |
698 |
| Mizuno et al., Biophys. Vol. 8, 95 (2012) |
mDia1 and formins: screw cap of the actin filament |
10 |
845 |
| Kinjo et al., Biophys. Vol. 8, 79 (2012) |
GIRAF: a method for fast search and flexible alignment of ligand binding
interfaces in proteins at atomic resolution |
4 |
799 |
| Watanabe et al., Biophys. Vol. 8, 73 (2012) |
Chemomechanical coupling of F1-ATPase under hydrolysis conditions |
2 |
704 |
| Hayashi et al., Biophys. Vol. 8, 67 (2012) |
Measurements of the driving forces of bio-motors using the fluctuation
theorem |
11 |
1299 |
| Fukuoka et al., Biophys. Vol. 8, 59 (2012) |
Coordinated regulation of multiple flagellar motors by the Escherichia
coli chemotaxis system |
6 |
1079 |
| Taniguchi et al., Biophys. Vol. 8, 51 (2012) |
Mechanical unfolding studies of protein molecules |
4 |
1106 |
| Murakami et al., Biophys. Vol. 8, 41 (2012) |
Rigor of cell fate decision by variable p53 pulses and roles of
cooperative gene expression by p53 |
3 |
857 |
| Mitsui et al., Biophys. Vol. 8, 27 (2012) |
Theory of muscle contraction mechanism with cooperative interaction among
crossbridges |
7 |
1317 |
| Jia et al., Biophys. Vol. 8, 21 (2012) |
Flow birefringence property of desmin filaments |
0 |
657 |
| Kamiguri et al., Biophys. Vol. 8, 11 (2012) |
Contraction behaviors of Vorticella sp. stalk investigated using
high-speed video camera. II: Viscosity effect of several types of polymer
additives |
2 |
870 |
| Kamiguri et al., Biophys. Vol. 8, 1 (2012) |
Contraction behaviors of Vorticella sp. stalk investigated using
high-speed video camera. I: Nucleation and growth model |
4 |
1058 |
| Tsukazaki et al.,
Biophys. Vol. 7, 129 (2011) |
The mechanism of protein export enhancement by the SecDF membrane
component |
5 |
834 |
| Miyakawa et al., Biophys. Vol. 7, 123 (2011) |
Regulatory mechanism of abscisic acid signaling |
11 |
941 |
| Yoshidome, Biophys. Vol. 7, 113 (2011) |
Importance of water entropy in rotation mechanism of F1-ATPase |
1 |
941 |
| Yoshii et al., Biophys. Vol. 7, 105 (2011) |
Kinetics of binding and diffusivity of leucine-enkephalin in large
unilamellar vesicle by pulsed-field-gradient 1H NMR in situ |
6 |
740 |
| Gerle, Biophys. Vol. 7, 99 (2011) |
Stabilization of Fo/Vo/Ao by a radial electric field |
2 |
760 |
| Iwata et al., Biophys. Vol. 7, 89 (2011) |
Light-induced structural changes of the LOV2 domains in various
phototropins revealed by FTIR spectroscopy |
1 |
843 |
| Sugawara et al., Biophys. Vol. 7, 77 (2011) |
Chemophoresis as a driving force for intracellular organization: Theory
and application to plasmid partitioning |
35 |
1293 |
| Mizuno et al., Biophys. Vol. 7, 69 (2011) |
Staurosporine induces lamellipodial widening in locomoting fish
keratocytes by abolishing the gradient from radial extension of leading edge |
4 |
716 |
| Koike et al., Biophys. Vol. 7, 59 (2011) |
Characterization of the flagellar motor composed of functional GFP-fusion
derivatives of FliG in the Na+-driven polar flagellum of Vibrio alginolyticus |
3 |
860 |
| Sudo et al., Biophys. Vol. 7, 51 (2011) |
Functional expression of a two-transmembrane HtrII protein using cell-free
synthesi |
0 |
950 |
| Kitagawa et al., Biophys. Vol. 7, 35 (2011) |
Roles of the C-terminal residues of calmodulin in structure and function |
5 |
934 |
| Jia et al., Biophys.
Vol. 7, 29 (2011) |
Limited digestion of α-actinin in the presence of F-actin |
0 |
733 |
| Iwamoto, Biophys. Vol. 7, 21 (2011) |
Structure, function and evolution of insect flight muscle |
45 |
2372 |
| Honda et al., Biophys. Vol. 7, 11 (2011) |
Two-dimensional periodic texture of actin filaments formed upon drying |
2 |
1009 |
| Shiba et al., Biophys. Vol. 7, 1 (2011) |
Systematic alanine insertion reveals the essential regions that encode
structure formation and activity of dihydrofolate reductase |
4 |
1305 |
| Watanabe et al., Biophys. Vol. 6, 67 (2010) |
Molecular mechanism of long-range synergetic color tuning between multiple
amino acid residues in conger rhodopsin |
13 |
936 |
| Haruyama et al., Biophys. Vol. 6, 59 (2010) |
Inhibition of thermophilic F1-ATPase by the ε subunit takes different path
from the ADP-Mg inhibition |
10 |
1055 |
| Sakata et al., Biophys. Vol. 6, 53 (2010) |
Estimation for diameter of superparamagnetic particles in Daphnia resting
eggs |
1 |
643 |
| Kitagawa et al., Biophys. Vol. 6, 37 (2010) |
Modeling of the gap junction of pancreatic β-cells and the robustness of
insulin secretion |
5 |
888 |
| Nishikata et al., Biophys. Vol. 6, 27 (2010) |
Molecular modeling of the HAMP domain of sensory rhodopsin II transducer
from Natronomonas pharaonis |
3 |
1022 |
| Matsuo et al., Biophys. Vol. 6, 13 (2010) |
X-ray fiber diffraction modeling of structural changes of the thin
filament upon activation of live vertebrate skeletal muscles |
6 |
1154 |
| Sato et al., Biophys. Vol. 6, 1 (2010) |
Actin oligomers at the initial stage of polymerization induced by
increasing temperature at low ionic strength: Study with small-angle X-ray
scattering |
7 |
1364 |
| Suda et al., Biophys. Vol. 5, 59 (2009) |
Analyzing observed or hidden heterogeneity on survival and mortality in an
isogenic C. elegans cohort |
7 |
641 |
| Nishikawa, Biophys. Vol. 5, 53 (2009) |
Natively unfolded proteins: An overview |
19 |
1090 |
| Sudo et al., Biophys. Vol. 5, 45 (2009) |
Comparative study of the ion flux pathway in stator units of proton- and
sodium-driven flagellar motors |
21 |
1146 |
| Kinjo, Biophys. Vol. 5, 37 (2009) |
Profile conditional random fields for modeling protein families with
structural information |
3 |
923 |
| Fukagawa et al., Biophys. Vol. 5, 25 (2009) |
Stochastic emergence of multiple intermediates detected by single-molecule
quasi-static mechanical unfolding of protein |
1 |
863 |
| Majima, Biophys. Vol. 5, 11 (2009) |
Load-dependent sliding direction change of a myosin head on an actin
molecule and its energetic aspects: Energy borrowing model of a cross-bridge
cycle |
0 |
800 |
| Maeno et al., Biophys. Vol. 5, 1 (2009) |
The pressure-temperature phase diagram of hen lysozyme at low pH |
19 |
1642 |
| Akasaka et al., Biophys. Vol. 4, 29 (2008) |
Pressure acceleration of proteolysis: A general mechanism |
19 |
947 |
| Nishioka et al., Biophys. Vol. 4, 19 (2008) |
Correlation between square of electron tunneling matrix element and
donor-acceptor distance in fluctuating protein media |
2 |
857 |
| Taniguchi et al., Biophys. Vol. 4, 11 (2008) |
The forward and backward stepping processes of kinesin are gated by ATP
binding |
2 |
740 |
| Kinoshita et al., Biophys. Vol. 4, 1 (2008) |
Intermolecular interaction of phosphatidylinositol with the lipid raft
molecules sphingomyelin and cholesterol |
5 |
980 |
| Kinjo et al., Biophys. Vol. 3, 75 (2007) |
Similarity search for local protein structures at atomic resolution by
exploiting a database management system |
19 |
1087 |
| Miyauchi et al., Biophys. Vol. 3, 63 (2007) |
Rho small GTPase regulates the stability of individual focal adhesions: a
FRET-based visualization of GDP/GTP exchange on small GTPases |
2 |
755 |
| Irisa et al., Biophys. Vol. 3, 57 (2007) |
Stereoscopic viewing system for proteins using OpenRasmol: a tool for
displaying a filament of proteins |
0 |
641 |
| Suzuki et al., Biophys. Vol. 3, 47 (2007) |
Insight into the sequence specificity of a probe on an Affymetrix GeneChip
by titration experiments using only one oligonucleotide |
2 |
595 |
| Sawada et al., Biophys. Vol. 3, 37 (2007) |
Ratio of membrane proteins in total proteomes of prokaryota |
11 |
711 |
| Patil et al., Biophys. Vol. 3, 27 (2007) |
The role of charged surface residues in the binding ability of small hubs
in protein-protein interaction networks |
9 |
794 |
| Fukuhara et al., Biophys. Vol. 3, 13 (2007) |
Prediction of interacting proteins from homology-modeled complex
structures using sequence and structure scores |
5 |
1258 |
| Shinoda et al., Biophys. Vol. 3, 1 (2007) |
Retention of local conformational compactness in unfolding of barnase;
Contribution of end-to-end interactions within quasi-modules |
3 |
807 |
| Suzuki et al., Biophys. Vol. 2, 63 (2006) |
Inherent characteristics of gene expression for buffering environmental
changes without the corresponding transcriptional regulations |
6 |
895 |
| Fuchino et al., Biophys. Vol. 2, 57 (2006) |
Photochemical and photophysical properties of carotenoid immobilized on a
surfactant micellar medium including chlorophyll as an artificial
photosynthesis system |
5 |
874 |
| Yahata et al., Biophys. Vol. 2, 45 (2006) |
Roles of charged residues in pH-dependent redox properties of cytochrome
c3 from Desulfovibrio vulgaris Miyazaki F |
1 |
1091 |
| Danev et al., Biophys. Vol. 2, 35 (2006) |
Applicability of thin film phase plates in biological electron microscopy |
14 |
962 |
| Iwaoka et al., Biophys. Vol. 2, 23 (2006) |
Possible roles of S···O and S···N interactions in the functions and
evolution of phospholipase A2 |
20 |
888 |
| Nara et al., Biophys. Vol. 2, 13 (2006) |
Processivity of kinesin motility is enhanced on increasing temperature |
10 |
820 |
| Watanabe et al., Biophys. Vol. 2, 1 (2006) |
Generation of a flexible loop structural ensemble and its application to
induced-fit structural changes following ligand binding |
6 |
864 |
| Kinjo et al., Biophys. Vol. 1, 67 (2005) |
Predicting secondary structures, contact numbers, and residue-wise contact
orders of native protein structures from amino acid sequences using critical
random networks |
14 |
1216 |
| Imai et al., Biophys. Vol. 1, 55 (2005) |
Mechanisms of secondary structure breakers in soluble proteins |
79 |
1241 |
| Noda et al., Biophys. Vol. 1, 45 (2005) |
Fluctuation of actin sliding over myosin thick filamets in vitro |
5 |
710 |
| Metsugi et al., Biophys. Vol. 1, 33 (2005) |
Sequence analysis of the gliding protein Gli349 in Mycoplasma mobile |
31 |
1044 |
| Furusawa et al., Biophys. Vol. 1, 25 (2005) |
Ubiquity of log-normal distributions in intra-cellular reaction dynamics |
116 |
1964 |
| Patil et al., Biophys. Vol. 1, 21 (2005) |
HINT: a database of annotated protein-protein interactions and their
homologs |
29 |
808 |
| Kitamura et al., Biophys. Vol. 1, 1 (2005) |
Mechanism of muscle contraction based on stochastic properties of single
actomyosin motors observed in vitro |
36 |
1499 |
Biophysics and Physicobiology