| Anne-Idil Farah et al. Biophys. Physicobiol. Vol. 22, e220033
(2025) |
Molecular dynamics simulations of amyloid-β(29–42) aggregation in bulk
water and at the air–water interface |
0 |
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| Ritsu Mizutori et al. Biophys. Physicobiol. Vol. 22, e220032
(2025) |
Protonation states of highly conserved carboxylic acids in NeoR |
0 |
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| Lin Zhang et al. Biophys. Physicobiol. Vol. 22, e220031 (2025) |
Physicochemical, functional, and evolutionary characteristics of protein
loop regions in human and Escherichia coli proteomes |
0 |
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| Yosuke Mizuno et al. Biophys. Physicobiol. Vol. 22, e220030
(2025) |
Schiff base deprotonation and structural changes in a mouse UV-sensitive
cone visual pigment revealed by FTIR spectroscopy at 77 K |
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| Mako Aoyama et al. Biophys. Physicobiol. Vol. 22, e220029 (2025) |
FTIR study of the wild-type and mutant proteins of a viral rhodopsin,
OLPVR1 |
0 |
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| Jiro Kakizaki et al. Biophys. Physicobiol. Vol. 22, e220028
(2025) |
Selection–diversification interplay in oligonucleotide chemical evolution |
0 |
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| Haruki Nakamura Biophys. Physicobiol. Vol. 22, e220027 (2025) |
Editorial: Announcement of BPPB paper awards 2025 |
0 |
47 |
| Anton Schwarz et al. Biophys. Physicobiol. Vol. 22, e220026
(2025) |
Fractal dimensions for tumour-related cell types of prostate cancer on
histopathology images using multiple-threshold box counting algorithm |
0 |
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| Hotaka Kobayashi et al. Biophys. Physicobiol. Vol. 22, e220025
(2025) |
A platform for analyzing translational control by RBPs at single-mRNA
resolution in cells |
0 |
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| Ritsu Mizutori et al. Biophys. Physicobiol. Vol. 22, e220024
(2025) |
Molecular properties of a viral heliorhodopsin, V2HeR2 |
0 |
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| Chika Okimura Biophys. Physicobiol. Vol. 22, e220023 (2025) |
Stress fiber contraction induces cell body rotation in single keratocytes |
0 |
236 |
| Tomoaki Okaniwa et al. Biophys. Physicobiol. Vol. 22, e220022
(2025) |
Finding differentially expressed genes between cell fates predicted by
image-based deep learning |
0 |
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| Tony Z. Jia et al. Biophys. Physicobiol. Vol. 22, e220021 (2025) |
Interdisciplinary investigations into the biophysics of the origins of
life |
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| Masayuki Hayakawa et al. Biophys. Physicobiol. Vol. 22, e220020
(2025) |
Approaching active matter from biophysics perspective |
0 |
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| Yuhei O. Tahara et al. Biophys. Physicobiol. Vol. 22, e220019
(2025) |
Visualization of peptidoglycan layer isolated from gliding diderm
bacteria, Flavobacterium johnsoniae and Myxococcus xanthus, by
quick-freeze deep-etch replica electron microscopy |
0 |
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| Tomoyasu Noji et al. Biophys. Physicobiol. Vol. 22, e220018
(2025) |
Origin of the unique topology of the triangular water cluster
in Rubrobacter xylanophilus rhodopsin |
1 |
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| Masaya Sagara et al. Biophys. Physicobiol. Vol. 22, e220017
(2025) |
Polymerization and stability of actin conjugated with polyethylene glycol |
0 |
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| Abhishek Mallick et al. Biophys. Physicobiol. Vol. 22, e220016
(2025) |
Characterizing deterioration of milk through bioimpedance spectroscopy |
0 |
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| Kodai Igarashi et al. Biophys. Physicobiol. Vol. 22, e220015
(2025) |
Protein–ligand affinity prediction via Jensen-Shannon divergence of
molecular dynamics simulation trajectories |
0 |
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| Hiroto Takahashi et al. Biophys. Physicobiol. Vol. 22, e220014
(2025) |
HulaChrimson: A Chrimson-like cation channelrhodopsin discovered using
freshwater metatranscriptomics from Lake Hula |
1 |
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| Amari Toshiki et al. Biophys. Physicobiol. Vol. 22, e220013
(2025) |
Cytoskeleton as a generator of characteristic physical properties of plant
cells: ‘cell wall,’ ‘large vacuole,’ and ‘cytoplasmic streaming’ |
0 |
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| Arima Okutani et al. Biophys. Physicobiol. Vol. 22, e220012
(2025) |
A method for isolating and cryopreserving intact mitochondria with
improved integrity and functionality |
1 |
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| Junichi Higo et al. Biophys. Physicobiol. Vol. 22, e220011
(2025) |
A virtual system-coupled molecular dynamics simulation free from
experimental knowledge on binding sites: Application to RNA-ligand binding
free-energy landscape |
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| Kazuma Shimizu et al. Biophys. Physicobiol. Vol. 22, e220010
(2025) |
A low-cost electric micromanipulator and its application to single-cell
electroporation |
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| Fumiya Kondo et al. Biophys. Physicobiol. Vol. 22, e220009
(2025) |
Structure-activity relationship of PET-degrading cutinase regulated by
weak Ca2+ binding and temperature |
1 |
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| Tetsuichi Wazawa et al. Biophys. Physicobiol. Vol. 22, e220008
(2025) |
Genetically-encoded temperature indicators for thermal biology |
0 |
775 |
| Nobutaka Shimizu et al. Biophys. Physicobiol. Vol. 22, e220007
(2025) |
Time-resolved small-angle X-ray scattering system development for the
biological macromolecules at SACLA: A pilot study |
0 |
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| Kana Suzuki et al. Biophys. Physicobiol. Vol. 22, e220006 (2025) |
Gliding direction of Mycoplasma mobile correlates with the
curved configuration of its cell shape |
0 |
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| Naoki Tomita et al. Biophys. Physicobiol. Vol. 22, e220005
(2025) |
Exploring hydrophilic sequence space to search for uncharted foldable
proteins by AlphaFold2 |
0 |
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| Kochi Sato et al. Biophys. Physicobiol. Vol. 22, e220004 (2025) |
Improvement in positional accuracy of neural-network predicted hydration
sites of proteins by incorporating atomic details of water-protein
interactions and site-searching algorithm |
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| Masataka Yoshimura et al. Biophys. Physicobiol. Vol. 22, e220003
(2025) |
Product release and substrate entry of aldehyde deformylating oxygenase
revealed by molecular dynamics simulations |
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| Yo Sat et al. Biophys. Physicobiol. Vol. 22, e220002 (2025) |
Measurement of protoplasmic streaming over the entire body
of Physarum plasmodium, and estimation of the transport and mixing
of protoplasma through the intricate vein network |
1 |
669 |
| Yuki Okamura et al. Biophys. Physicobiol. Vol. 22, e220001
(2025) |
Near-infrared spectroscopic study of blood flow changes in the
dorsolateral prefrontal cortex during pain relief by odor stimulation |
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| Mikio Kataoka et al. Biophys. Physicobiol. Vol. 21, e212013
(2024) |
Half a Century of Biophysics: A Comparison of Presentation Statistics from
the 6th and 21st IUPAB Congresses |
1 |
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| Kumiko Hayashi et al. Biophys. Physicobiol. Vol. 21, e212012
(2024) |
A round table at IUPAB Congress in Kyoto 2024: Dreaming the next 50 years
in our biophysics |
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| Nathan Nunes Evangelista et al. Biophys. Physicobiol. Vol. 21,
e212011 (2024) |
Constructing virtual DNA-nanomachines |
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| Lissy M Hartmann et al. Biophys. Physicobiol. Vol. 21, e212010
(2024) |
Using interactive deep learning to track cells: A report on a 3-day
hands-on training program at IUPAB 2024 |
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| Huong T. Vu Biophys. Physicobiol. Vol. 21, e212009 (2024) |
DNA nanomachine tutorial |
1 |
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| Nor Akmalyati Sulong et al. Biophys. Physicobiol. Vol. 21,
e212008 (2024) |
GENESIS and CHARMM-GUI: Advances and applications from Hands-on training
program C at RIKEN |
1 |
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| Yuze Sun Biophys. Physicobiol. Vol. 21, e212007 (2024) |
Hands-on training experience of C-trap |
0 |
271 |
| Asuka Takeda-Sakazume Biophys. Physicobiol. Vol. 21, e212006
(2024) |
Experience report of Hands-on Training Program E: Exploring multi-cellular
mechanics |
1 |
204 |
| Karina New Biophys. Physicobiol. Vol. 21, e212005 (2024) |
IUPAB and BSJ meeting Kyoto: Reflections on hands on workshop “Real-time
single-molecule experiments with optical tweezers and correlated fluorescence
microscopy” with LUMICKS C-trap, emphasising the importance of practicing
international and interdisciplinary science |
1 |
236 |
| Koki Yoshida Biophys. Physicobiol. Vol. 21, e212004 (2024) |
Experience of Hands-on training program on DNA Nanomachine at IUPAB2024 |
1 |
248 |
| Zuzana Johanovská Biophys. Physicobiol. Vol. 21, e212003 (2024) |
Feeling a nanoworld with optical tweezers: Hands on training at IUPAB 2024 |
1 |
230 |
| Yuze Sun Biophys. Physicobiol. Vol. 21, e212002 (2024) |
Hands-on training experience of C-trap |
1 |
235 |
| Hiroyuki Noji Biophys. Physicobiol. Vol. 21, e212001 (2024) |
Editorial: IUPAB2024 Congress in Kyoto |
6 |
528 |
| Michio Hiroshima et al. Biophys. Physicobiol. Vol. 21, e211018
(2024) |
Application of single-molecule analysis to singularity phenomenon of cells |
1 |
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| Taro Ichimura et al. Biophys. Physicobiol. Vol. 21, e211017
(2024) |
Strength in numbers: Unleashing the potential of trans-scale scope
AMATERAS for massive cell quantification |
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| Hideaki Fujita et al. Biophys. Physicobiol. Vol. 21, e211016
(2024) |
Yuragi biomarker concept for evaluating human induced pluripotent stem
cells using heterogeneity-based Raman finger-printing |
1 |
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| Yuriko Yoneda et al. Biophys. Physicobiol. Vol. 21, e211015
(2024) |
Real-time imaging of human endothelial-to-hematopoietic transition in
vitro using pluripotent stem cell derived hemogenic endothelium |
1 |
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| Sulimon Sattari et al. Biophys. Physicobiol. Vol. 21, e211014
(2024) |
Inferring the roles of individuals in collective systems using
information-theoretic measures of influence |
2 |
594 |
| Takeharu Nagai Biophys. Physicobiol. Vol. 21, e211013 (2024) |
Editorial: Singularity Biology and Beyond |
1 |
537 |
| Shunsuke Mori et al. Biophys. Physicobiol. Vol. 21,
e211012 (2024) |
Model systems for discovering evolutionary singularity of bilaterian
physiological regulation: lessons from studies on simple/primitive flatworms |
0 |
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| Tomonobu M Watanabe et al. Biophys. Physicobiol. Vol. 21,
e211011 (2024) |
Visualizing Singularity Phenomenon |
0 |
387 |
| Masahiro Ono Biophys. Physicobiol. Vol. 21, e211010 (2024) |
Unraveling T-cell dynamics using fluorescent timer: Insights from the
Tocky system |
1 |
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| Hisashi Shidara et al. Biophys. Physicobiol. Vol. 21, e211009
(2024) |
Chromophore-assisted light inactivation of target proteins for singularity
biology |
1 |
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| Hiroko Bannai et al. Biophys. Physicobiol. Vol. 21, e211008
(2024) |
Research on the molecular mechanism of singularity phenomenon in
neurological disorders |
1 |
525 |
| Taku Okazaki et al. Biophys. Physicobiol. Vol. 21, e211007
(2024) |
Elucidating molecular and cellular mechanisms of singularity phenomena in
immunology |
0 |
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| Tomoya Katakai et al. Biophys. Physicobiol. Vol. 21, e211006
(2024) |
A battle between two biological singularities: Immune response vs. cancer |
0 |
523 |
| Katsuyuki Shiroguchi Biophys. Physicobiol. Vol. 21, e211005
(2024) |
Integration of single-cell manipulation, whole transcriptome analysis, and
image-based deep learning for studying “Singularity Biology” |
0 |
550 |
| Akihiro Sakama et al. Biophys. Physicobiol. Vol. 21, e211004
(2024) |
Current advances in the development of bioluminescent probes toward
spatiotemporal trans-scale imaging |
3 |
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| Hitoshi Hashimoto et al. Biophys. Physicobiol. Vol. 21, e211003
(2024) |
Search for singularity cells at the onset of brain disorders using
whole-brain imaging |
0 |
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| Rei Shirakawa et al. Biophys. Physicobiol. Vol. 21, e211002
(2024) |
Regulation of long-term memory by a few clock neurons in Drosophila |
0 |
742 |
| Kazuki Horikawa et al. Biophys. Physicobiol. Vol. 21, e211001
(2024) |
Analysis of the singularity cells controlling the pattern formation in
multi-cellular systems |
1 |
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| Takayoshi Tsubo Biophys. Physicobiol. Vol. 21, e210028 (2024) |
Neuron with well-designed ionic system |
0 |
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| Thi-Hong-Tuoi Do et al. Biophys. Physicobiol. Vol. 21, e210027
(2024) |
Comparative study of alpha-glucosidase inhibition of four Vietnamese
medicinal plants Combretum quadrangulare, Dicranopteris
linearis, Psychotria adenophylla, and Garcinia
schomburgkiana: In vitro and in vivo studies |
1 |
404 |
| Kentaro Kito et al. Biophys. Physicobiol. Vol. 21, e210026
(2024) |
Electrophysiological analysis of hyperkalemic cardiomyocytes using a
multielectrode array system |
0 |
522 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 21, e210025 (2024) |
Announcement of BPPB paper awards 2024 |
0 |
318 |
| Atsuko Uenoyama et al. Biophys. Physicobiol. Vol. 21, e210024
(2024) |
Rapid in vitro method to assemble and transfer DNA fragments into the
JCVI-syn3B minimal synthetic bacterial genome through Cre/loxP system |
0 |
545 |
| Shigeo Sakuragi et al. Biophys. Physicobiol. Vol. 21, e210023
(2024) |
Inducing aggresome and stable tau aggregation in Neuro2a cells with an
optogenetic tool |
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| Sakura Takada et al. Biophys. Physicobiol. Vol. 21, e210022
(2024) |
Artificial cell system as a tool for investigating pattern formation
mechanisms of intracellular reaction-diffusion waves |
1 |
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| Akihiro Masuda et al. Biophys. Physicobiol. Vol. 21, e210021
(2024) |
Data-driven score tuning for ChooseLD: A structure-based drug design
algorithm with empirical scoring and evaluation of ligand–protein docking
predictability |
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| Toshiki Yoda et al. Biophys. Physicobiol. Vol. 21, e210020
(2024) |
Four-color single-molecule imaging system for tracking GPCR dynamics with
fluorescent HiBiT peptide |
4 |
955 |
| Sena Tarumoto et al. Biophys. Physicobiol. Vol. 21, e210019
(2024) |
Monitoring of enzymatic cleavage reaction of GST-fusion protein on
biolayer interferometry sensor |
0 |
406 |
| Takanobu A. Katoh Biophys. Physicobiol. Vol. 21, e210018
(2024) |
Function of nodal cilia in left-right determination: Mechanical regulation
in initiation of symmetry breaking |
2 |
534 |
| Shunsuke Tomita et al. Biophys. Physicobiol. Vol. 21, e210017
(2024) |
Chemical tongues as multipurpose bioanalytical tools for the
characterization of complex biological samples |
1 |
645 |
| Kohji Ito et al. Biophys. Physicobiol. Vol. 21, e210016 (2024) |
Unraveling the fastest myosin: Discovery history and structure-function
relationships of algae Chara myosin XI |
0 |
684 |
| Minoru Fukushima et al. Biophys. Physicobiol. Vol. 21, e210015
(2024) |
Internal structure of Mycoplasma mobile gliding machinery
analyzed by negative staining electron tomography |
1 |
619 |
| Hiroyuki Iwamoto et al. Biophys. Physicobiol. Vol. 21, e210014
(2024) |
X-ray diffraction recording from a small amount of fibrous protein
materials oriented by a micro shear-flow cell |
0 |
571 |
| Nasori Nasori et al. Biophys. Physicobiol. Vol. 21, e210013
(2024) |
Optimizing tumor treating fields for blood cancer therapy: Analysis of
electric field distribution and dose density |
1 |
640 |
| Hisashi Shimamura et al. Biophys. Physicobiol. Vol. 21, e210012
(2024) |
Charge block-driven liquid-liquid phase separation: A mechanism of how
phosphorylation regulates phase behavior of disordered proteins |
2 |
1239 |
| Kota Katayama et al. Biophys. Physicobiol. Vol. 21, e210011
(2024) |
Holistic concepts in GPCR dynamics |
1 |
504 |
| Yusuke Sato et al. Biophys. Physicobiol. Vol. 21, e210010 (2024) |
Pioneering artificial cell-like structures with DNA nanotechnology-based
liquid-liquid phase separation |
5 |
1017 |
| Shang-Te_Danny Hsu Biophys. Physicobiol. Vol. 21, e210009 (2024) |
The Asian Biophysics Association: Reborn from the COVID-19 pandemic |
1 |
502 |
| Ananta Kusuma Yoga Pratama et al. Biophys. Physicobiol. Vol. 21,
e210008 (2024) |
Resonance frequency measurement to identify stiffness variations based on
photoacoustic imaging |
1 |
633 |
| Chisato Okamoto et al. Biophys. Physicobiol. Vol. 21, e210007
(2024) |
Molecular dynamics simulation analysis of structural dynamic cross
correlation induced by odorant hydrogen-bonding in mouse eugenol ol- factory
receptor |
7 |
795 |
| Seine A. Shintani Biophys. Physicobiol. Vol. 21, e210006 (2024) |
Observation of sarcomere chaos induced by changes in calcium concentration
in cardiomyocytes |
4 |
685 |
| Takashi Ohgita et al. Biophys. Physicobiol. Vol. 21, e210005
(2024) |
Physicochemical mechanisms of aggregation and fibril formation of
α-synuclein and apolipoprotein A-I |
1 |
745 |
| Hiroshi Sunami et al. Biophys. Physicobiol. Vol. 21, e210004
(2024) |
Shape of scaffold controlling the direction of cell migration |
3 |
744 |
| Hirohito Yamazaki et al. Biophys. Physicobiol. Vol. 21, e210003
(2024) |
The potential of nanopore technologies toward empowering biophysical
research: Brief history, basic principle and applications |
2 |
724 |
| Minoru Kurisu et al. Biophys. Physicobiol. Vol. 21, e210002
(2024) |
Concepts of a synthetic minimal cell: Information molecules, metabolic
pathways, and vesicle reproduction |
3 |
1003 |
| Yoshihiko Furuike et al. Biophys. Physicobiol. Vol. 21, e210001
(2024) |
Structure-function relationship of KaiC around dawn |
2 |
1053 |
| Junichi Higo et al. Biophys. Physicobiol. Vol. 20, e200047
(2023) |
Binding free-energy landscapes of small molecule binder and non-binder to
FMN riboswitch: All-atom molecular dynamics |
3 |
508 |
| Daisuke Kohda et al. Biophys. Physicobiol. Vol. 20, e200046
(2023) |
Residue-based correlation between equilibrium and rate constants is an
experimental formulation of the consistency principle for smooth structural
changes of proteins |
1 |
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| Daiki Fukuhara et al. Biophys. Physicobiol. Vol. 20, e200045
(2023) |
Inhibition of amyloid-β(16–22) aggregation by polyphenols using replica
permutation with solute tempering molecular dynamics simulation |
6 |
481 |
| Takahiro Yamashita et al. Biophys. Physicobiol. Vol. 20, e200044
(2023) |
Welcome to the borderless rhodopsin world |
0 |
622 |
| Madoka Suzuki et al. Biophys. Physicobiol. Vol. 20, e200043
(2023) |
Hybrid Biophysics: Interdisciplinary approaches for trans-scale analysis
of organism-environment interactions |
0 |
420 |
| Izuru Kawamura et al. Biophys. Physicobiol. Vol. 20, e200042
(2023) |
Bottom-up creation of cell-free molecular systems: Basic research toward
social implementation |
0 |
498 |
| Takashi Sumikama et al. Biophys. Physicobiol. Vol. 20, e200041
(2023) |
Updating view of membrane transport proteins by simulation studies |
0 |
496 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 20, e200040 (2023) |
Announcement of BPPB paper awards 2023 |
0 |
446 |
| Hiroyuki Noji Biophys. Physicobiol. Vol. 20, e200039 (2023) |
Rocking Out Biophysics in IUPAB2024 Kyoto! |
5 |
682 |
| Junko Nakai et al. Biophys. Physicobiol. Vol. 20, e200038 (2023) |
Changes in protein phosphorylation by insulin administration in the
central nervous system of the gastropod mollusk Lymnaea stagnalis |
1 |
608 |
| Tomohiro Shima et al. Biophys. Physicobiol. Vol. 20, e200037
(2023) |
The third Japan-U.S. symposium on motor proteins and associated
single-molecule biophysics |
0 |
564 |
| Rawiwan Wongnak et al. Biophys. Physicobiol. Vol. 20, e200036
(2023) |
E. coli production of a multi-disulfide bonded SARS-CoV-2 Omicron
BA.5 RBD exhibiting native-like biochemical and biophysical properties |
4 |
707 |
| Yuya Hanazono et al. Biophys. Physicobiol. Vol. 20, e200035
(2023) |
Description of peptide bond planarity from high-resolution neutron
crystallography |
2 |
632 |
| So Nakashima et al. Biophys. Physicobiol. Vol. 20, e200034
(2023) |
Population dynamics models for various forms of adaptation |
0 |
695 |
| Tohru Minamino et al. Biophys. Physicobiol. Vol. 20, e200033
(2023) |
Frontiers of microbial movement research |
0 |
705 |
| Ryota Sakamoto et al. Biophys. Physicobiol. Vol. 20, e200032
(2023) |
Unveiling the physics underlying symmetry breaking of the actin
cytoskeleton: An artificial cell-based approach |
0 |
940 |
| Tatsuya Iida et al. Biophys. Physicobiol. Vol. 20, e200031
(2023) |
SATORI: Amplification-free digital RNA detection method for the diagnosis
of viral infections |
6 |
979 |
| Tetsuichi Wazawa et al. Biophys. Physicobiol. Vol. 20, e200030
(2023) |
Joule heating involving ion currents through channel proteins |
2 |
1084 |
| Hiroki Yasuga Biophys. Physicobiol. Vol. 20, e200029 (2023) |
Methods to spontaneously generate three dimensionally arrayed
microdroplets triggered by capillarity for bioassays and bioengineering |
0 |
562 |
| Kanji Takahashi et al. Biophys. Physicobiol. Vol. 20, e200028
(2023) |
Ring formation by Vibrio fusion protein composed of FliF and
FliG, MS-ring and C-ring component of bacterial flagellar motor in membrane |
4 |
590 |
| Yutaro Nagasawa et al. Biophys. Physicobiol. Vol. 20, e200027
(2023) |
LOV2-based photoactivatable CaMKII and its application to single synapses:
Local Optogenetics |
0 |
753 |
| Shunsuke Tagami Biophys. Physicobiol. Vol. 20, e200026 (2023) |
Why we are made of proteins and nucleic acids: Structural biology views on
extraterrestrial life |
2 |
1203 |
| Manabu Hori et al. Biophys. Physicobiol. Vol. 20, e200025 (2023) |
RNA interference reveals the escape response mechanism
of Paramecium to mechanical stimulation |
1 |
638 |
| Yoshiaki Kinosita et al. Biophys. Physicobiol. Vol. 20, e200024
(2023) |
Flagellar polymorphism-dependent bacterial swimming motility in a
structured environment |
2 |
567 |
| Kenta Odagiri et al. Biophys. Physicobiol. Vol. 20, e200023
(2023) |
Mathematical model for promotion of wound closure with ATP release |
3 |
464 |
| Shigeyuki Matsumoto et al. Biophys. Physicobiol. Vol. 20,
e200022 (2023) |
Quantitative analysis of protein dynamics using a deep learning technique
combined with experimental cryo-EM density data and MD simulations |
2 |
742 |
| Hiroshi Imamura Biophys. Physicobiol. Vol. 20, e200021 (2023) |
Phone2SAS: 3D scanning by smartphone aids the realization of small-angle
scattering |
1 |
545 |
| Shingo Wakao et al. Biophys. Physicobiol. Vol. 20, e200020
(2023) |
Mathematical model of structural changes in nuclear speckle |
0 |
693 |
| Atsushi Mochizuki Biophys. Physicobiol. Vol. 20, e200019 (2023) |
Controlling complex dynamical systems based on the structure of the
networks |
1 |
497 |
| Hiromi Miyoshi et al. Biophys. Physicobiol. Vol. 20, e200018
(2023) |
Guideline for design of substrate stiffness for mesenchymal stem cell
culture based on heterogeneity of YAP and RUNX2 responses |
2 |
755 |
| Tatsuki Negami et al. Biophys. Physicobiol. Vol. 20, e200017
(2023) |
Calculations of the binding free energies of the Comprehensive in
vitro Proarrhythmia Assay (CiPA) reference drugs to cardiac ion channels |
2 |
799 |
| Tomoyoshi Seto Biophys. Physicobiol. Vol. 20, e200016 (2023) |
General anesthetic binding mode via hydration with weak affinity and
molecular discrimination: General anesthetic dissolution in interfacial water
of the common binding site of GABAA receptor |
1 |
661 |
| Takashi Tominaga et al. Biophys. Physicobiol. Vol. 20, e200015
(2023) |
Stable wide-field voltage imaging for observing neuronal plasticity at the
neuronal network level |
3 |
695 |
| Yasuha Watanabe et al. Biophys. Physicobiol. Vol. 20, e200014
(2023) |
Molecular mechanisms of the high performance of spider silks revealed
through multi-omics analysis |
10 |
1040 |
| Keiichi Yamaguchi et al. Biophys. Physicobiol. Vol. 20,
e200013 (2023) |
Mechanisms of polyphosphate-induced amyloid fibril formation triggered by
breakdown of supersaturation |
5 |
743 |
| Tony Z. Jia et al. Biophys. Physicobiol. Vol. 20, e200012 (2023) |
Recent progress in primitive polyester synthesis and membraneless
microdroplet assembly |
4 |
765 |
| Takayuki Umakoshi Biophys. Physicobiol. Vol. 20, e200011 (2023) |
Near-field optical microscopy toward its applications for biological
studies |
4 |
797 |
| Hirohito Yamazaki et al. Biophys. Physicobiol. Vol. 20, e200010
(2023) |
Accelerating biophysical studies and applications by label-free nanopore
sensing |
0 |
724 |
| Kohei Otomo et al. Biophys. Physicobiol. Vol. 20, e200009 (2023) |
Improving two-photon excitation microscopy for sharper and faster
biological imaging |
1 |
855 |
| Toshiki Yagi et al. Biophys. Physicobiol. Vol. 20, e200008
(2023) |
Regulation of motor activity of ciliary outer-arm dynein by the light
chain 1; Implications from the structure of the light chain bound to the
microtubule-binding domain of the heavy chain |
1 |
647 |
| Hidekazu Hiroaki Biophys. Physicobiol. Vol. 20, e200007 (2023) |
Molecular mechanisms of amyloid-β peptide fibril and oligomer formation:
NMR-based challenges |
5 |
971 |
| Shintaroh Kubo et al. Biophys. Physicobiol. Vol. 20, e200006
(2023) |
Removing the parachuting artifact using two-way scanning data in
high-speed atomic force microscopy |
6 |
958 |
| Tomoyoshi Seto Biophys. Physicobiol. Vol. 20, e200005 (2023) |
General anesthetic binding mode via hydration with weak affinity and
molecular discrimination: General anesthetic dissolution in interfacial water
of the common binding site of GABAA receptor |
1 |
592 |
| Akiko Yamada et al. Biophys. Physicobiol. Vol. 20, e200004
(2023) |
Regulatory mechanisms of mitochondrial calcium uptake by the calcium
uniporter complex |
4 |
682 |
| Kanta Fujimoto et al. Biophys. Physicobiol. Vol. 20, e200003
(2023) |
Revisiting oxytocin generation in keratinocytes |
5 |
680 |
| Atsushi Hirano Biophys. Physicobiol. Vol. 20, e200002 (2023) |
What is Aromaphilicity? |
2 |
619 |
| Kento Yonezawa et al. Biophys. Physicobiol. Vol. 20, e200001
(2023) |
MOLASS: Software for automatic processing of matrix data obtained from
small-angle X-ray scattering and UV–visible spectroscopy combined with
size-exclusion chromatography |
12 |
939 |
| María del Carmen Marín et al. Biophys. Physicobiol. Vol. 20,
e201023 (2023) |
Biophysical characterization of microbial rhodopsins with DSE motif |
2 |
826 |
| Takayuki Uchihashi et al. Biophys. Physicobiol. Vol. 20, e201022
(2023) |
Introduction of Session 2, “Advanced methods for retinal proteins” |
0 |
321 |
| Yuki Sudo Biophys. Physicobiol. Vol. 20, e201021 (2023) |
Introduction of Session 1, “Photochemistry of retinal proteins” |
0 |
334 |
| Hiroo Imai et al. Biophys. Physicobiol. Vol. 20, e201020 (2023) |
Optogenetics II, sponsored by JST: Report for the session 13 |
0 |
310 |
| Hiroo Imai et al. Biophys. Physicobiol. Vol. 20, e201019 (2023) |
Functional diversity and evolution in animal rhodopsins: Report for the
session 11 |
0 |
357 |
| Hiroo Imai et al. Biophys. Physicobiol. Vol. 20, e201018
(2023) |
Function of animal rhodopsins and related proteins: Report for the session
9 |
0 |
283 |
| Sui Arikawa et al. Biophys. Physicobiol. Vol. 20, e201017 (2023) |
Solid-state NMR for the characterization of retinal chromophore and Schiff
base in TAT rhodopsin embedded in membranes under weakly acidic conditions |
6 |
524 |
| Akihiro Otomo et al. Biophys. Physicobiol. Vol. 20, e201016
(2023) |
Protein dynamics of a light-driven Na+ pump rhodopsin probed using a
tryptophan residue near the retinal chromophore |
0 |
631 |
| Takeshi Murata Biophys. Physicobiol. Vol. 20, e201015 (2023) |
Introduction of Session 8, “Structural mechanism of animal rhodopsins and
GPCR” |
0 |
329 |
| Tsutomu Kouyama et al. Biophys. Physicobiol. Vol. 20, e201014
(2023) |
Structural mechanism of microbial rhodopsins: Report for the session 4 at
the 19th International Conference on Retinal Proteins |
0 |
366 |
| Yoshitaka Fukada Biophys. Physicobiol. Vol. 20, e201013 (2023) |
Recent advances in biological rhythm and non-visual photoreception: Report
for the session 10 at the 19th International Conference on Retinal Proteins |
1 |
376 |
| Takeshi Murata Biophys. Physicobiol. Vol. 20, e201012 (2023) |
Introduction of Session 7, “Functional diversity and evolution in
microbial rhodopsins” |
0 |
331 |
| Elena G. Govorunova et al. Biophys. Physicobiol. Vol. 20,
e201011 (2023) |
Potassium-selective channelrhodopsins |
6 |
780 |
| Peter Hegemann et al. Biophys. Physicobiol. Vol. 20, e201010
(2023) |
Dieter Oesterhelt (1940–2022): Life with light and color, pioneer of
membrane protein research |
2 |
1237 |
| Kazumi Shimono et al. Biophys. Physicobiol. Vol. 20, e201009
(2023) |
Recent advances in signaling and activation mechanism in microbial
rhodopsins: Report for the session 6 at the 19th International
Conference on Retinal Proteins |
0 |
411 |
| Kumari Sushmita et al. Biophys. Physicobiol. Vol. 20, e201008
(2023) |
Algal rhodopsins encoding diverse signal sequence holds potential for
expansion of organelle optogenetics |
2 |
803 |
| Jonathan R. Church et al. Biophys. Physicobiol. Vol. 20, e201007
(2023) |
Induction effects on the absorption maxima of photoreceptor proteins |
1 |
715 |
| Mikio Kataoka Biophys. Physicobiol. Vol. 20, e201006 (2023) |
Structural studies of bacteriorhodopsin in BC era |
1 |
604 |
| Yuji Furutani et al. Biophys. Physicobiol. Vol. 20, e201005
(2023) |
Ion-transporting mechanism in microbial rhodopsins: Mini-review relating
to the session 5 at the 19th International Conference on Retinal Proteins |
1 |
781 |
| Satoru Kawamura et al. Biophys. Physicobiol. Vol. 20, e201004
(2023) |
Introduction of Session 14, “Physiology of retinal proteins” |
0 |
302 |
| Chii-Shen Yang et al. Biophys. Physicobiol. Vol. 20, e201003
(2023) |
From activation dynamics to functional diversity of retinal proteins:
Report for the session 3 at the 19th International Conference on Retinal
Proteins |
0 |
363 |
| Mikio Kataoka et al. Biophys. Physicobiol. Vol. 20, e201002
(2023) |
Recent advances in optogenetics: Report for the session 12 at the 19th
International Conference on Retinal Proteins |
2 |
542 |
| Yuki Sudo et al. Biophys. Physicobiol. Vol. 20, e201001 (2023) |
Forewords to the special issue “Recent advances in retinal protein
research |
0 |
496 |
| Sristilekha Nath et al. Biophys. Physicobiol. Vol. 19, e190048
(2022) |
Intestinal and optic-cup organoids as tools for unveiling mechanics of
self-organizing morphogenesis |
1 |
626 |
| Tasuku Hirayama et al. Biophys. Physicobiol. Vol. 19, e190047
(2022) |
Live-cell imaging of bio-metal species |
0 |
509 |
| Tohru Minamino et al. Biophys. Physicobiol. Vol. 19, e190046
(2022) |
Activation mechanism of the bacterial flagellar dual-fuel protein export
engine |
6 |
691 |
| Tsutomu Yamane et al. Biophys. Physicobiol. Vol. 19, e190045
(2022) |
Development of the force field for cyclosporine A |
1 |
906 |
| Akira Kitamura et al. Biophys. Physicobiol. Vol. 19, e190044
(2022) |
Physico- and chemical biology using nanomanipulation and micromanipulation
technologies |
0 |
587 |
| Kazuma Yasuhara et al. Biophys. Physicobiol. Vol. 19, e190043
(2022) |
Creation of supramolecular biomembrane by the bottom-up self-assembly:
Where material science meets biophysics |
2 |
631 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 19, e190042 (2022) |
Announcement of BPPB paper awards 2022 |
0 |
529 |
| Chiaki Seto et al. Biophys. Physicobiol. Vol. 19, e190041 (2022) |
Influence of gap junctions upon Ca2+ propagation from stimulated
keratinocytes to DRG neurons |
2 |
795 |
| Masami Lintuluoto et al. Biophys. Physicobiol. Vol. 19, e190040
(2022) |
Investigation on substrate specificity and catalytic activity of serine
protease neuropsin |
2 |
837 |
| Akihiro Otomo et al. Biophys. Physicobiol. Vol. 19, e190039
(2022) |
Tackle “Molecular Engine” by early-career researchers |
0 |
702 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 19, e190038 (2022) |
Announcement of new Editorial Board members |
1 |
617 |
| Akira Sasaki et al. Biophys. Physicobiol. Vol. 19, e190037
(2022) |
Standardization of luminescence, fluorescence measurements, and light
microscopy: Current situation and perspectives |
1 |
706 |
| Hiroyuki Ebata et al. Biophys. Physicobiol. Vol. 19, e190036
(2022) |
Interplay among cell migration, shaping, and traction force on a matrix
with cell-scale stiffness heterogeneity |
0 |
1155 |
| Naoki Yamamoto et al. Biophys. Physicobiol. Vol. 19, e190035
(2022) |
Protein large-scale motions revealed by quantum beams: A new era in
understanding protein dynamics |
0 |
781 |
| Shingo Sotoma et al. Biophys. Physicobiol. Vol. 19, e190034
(2022) |
Quantum nanodiamonds for sensing of biological quantities: Angle,
temperature, and thermal conductivity |
10 |
1663 |
| Kayo Hibino Biophys. Physicobiol. Vol. 19, e190033 (2022) |
Participation in 44th Indian Biophysical Society Meeting |
0 |
636 |
| Ryo Iizuka et al. Biophys. Physicobiol. Vol. 19, e190032 (2022) |
Zero-mode waveguides and nanopore-based sequencing technologies accelerate
single-molecule studies |
7 |
1620 |
| Makito Miyazaki et al. Biophys. Physicobiol. Vol. 19, e190031
(2022) |
Uncovering the design principles of supramolecular assemblies through
manipulation of the structures, dynamics, and functions |
0 |
811 |
| Kumiko Hayashi et al. Biophys. Physicobiol. Vol. 19, e190030
(2022) |
Japan–US symposium on motor proteins and associated single-molecule
biophysics |
1 |
729 |
| Madoka Suzuki et al. Biophys. Physicobiol. Vol. 19, e190029
(2022) |
A five-course meal symposium on “The Future of Muscle is Now” |
1 |
744 |
| Ryo Kitahara et al. Biophys. Physicobiol. Vol. 19, e190028
(2022) |
Phase separation by biopolymers: Basics and applications |
0 |
886 |
| Takeru Kameda et al. Biophys. Physicobiol. Vol. 19, e190027
(2022) |
Molecular dynamics analysis of biomolecular systems including nucleic
acids |
5 |
1502 |
| Takuya Ohmura et al. Biophys. Physicobiol. Vol. 19, e190026
(2022) |
Simple dynamics underlying the survival behaviors of ciliates |
3 |
1216 |
| Ha T. T. Duong et al. Biophys. Physicobiol. Vol. 19, e190025
(2022) |
Computational study of the impact of nucleotide variations on highly
conserved proteins: In the case of actin |
1 |
981 |
| Takahiro Muraoka et al. Biophys. Physicobiol. Vol. 19, e190024
(2022) |
Biophysical elucidation of neural network and chemical regeneration of
neural tissue |
0 |
955 |
| Matsuyuki Shirota et al. Biophys. Physicobiol. Vol. 19, e190023
(2022) |
Current status and future perspectives of the evaluation of missense
variants by using three-dimensional structures of proteins |
0 |
963 |
| Daisuke Kuroda et al. Biophys. Physicobiol. Vol. 19, e190022
(2022) |
Microsecond molecular dynamics suggest that a non-synonymous mutation,
frequently observed in patients with mild symptoms in Tokyo, alters dynamics
of the SARS-CoV-2 main protease |
10 |
1563 |
| Kenji Mishima et al. Biophys. Physicobiol. Vol. 19, e190021
(2022) |
Estimation of the relative contributions to the electronic energy transfer
rates based on Förster theory: The case of C-phycocyanin chromophores |
10 |
2155 |
| Kyoko Shinzawa-Itoh et al. Biophys. Physicobiol. Vol. 19,
e190020 (2022) |
Biochemical and crystallographic studies of monomeric and dimeric bovine
cytochrome c oxidase |
2 |
1539 |
| Izuru Kawamura et al. Biophys. Physicobiol. Vol. 19, e190019
(2022) |
Structure of a retinal chromophore of dark-adapted middle rhodopsin as
studied by solid-state nuclear magnetic resonance spectroscopy |
0 |
1161 |
| Masayuki Oda Biophys. Physicobiol. Vol. 19, e190018 (2022) |
Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme
and its engineering: application to enzymatic PET depolymerization |
2 |
1373 |
| Koya Sakuma Biophys. Physicobiol. Vol. 19, e190017 (2022) |
Limitations of the ABEGO-based backbone design: ambiguity between
αα-corner and αα-hairpin |
3 |
1208 |
| Takamitsu J Morikawa et al. Biophys. Physicobiol. Vol. 19,
e190016 (2022) |
Glycine insertion modulates the fluorescence properties of Aequorea
victoria green fluorescent protein and its variants in their ambient
environment |
11 |
1766 |
| Keisuke Inoue et al. Biophys. Physicobiol. Vol. 19, e190015
(2022) |
Coarse-grained molecular dynamics simulations of base-pair mismatch
recognition protein MutS sliding along DNA |
4 |
1348 |
| Etsuro Ito et al. Biophys. Physicobiol. Vol. 19, e190014 (2022) |
Dorsolateral prefrontal cortex sensing analgesia |
6 |
1655 |
| Toru Kondo et al. Biophys. Physicobiol. Vol. 19, e190013 (2022) |
Recent advances in single-molecule spectroscopy studies on
light-harvesting processes in oxygenic photosynthesis |
6 |
1622 |
| Shinjiro Nakahata et al. Biophys. Physicobiol. Vol. 19, e190012
(2022) |
Mathematical model of chromosomal dynamics during DNA double strand break
repair in budding yeast |
1 |
1382 |
| Takao K. Suzuki Biophys. Physicobiol. Vol. 19, e190011 (2022) |
Phenotypic systems biology for organisms: Concepts, methods and case
studies |
4 |
2017 |
| Yuhei Tachi et al. Biophys. Physicobiol. Vol. 19, e190010 (2022) |
Molecular dynamics simulations of amyloid-β peptides in heterogeneous
environments |
9 |
1643 |
| Fumiaki Kono et al. Biophys. Physicobiol. Vol. 19, e190009
(2022) |
Current status of neutron crystallography in structural biology |
15 |
1587 |
| Damien Simon et al. Biophys. Physicobiol. Vol. 19, e190008
(2022) |
Slow and temperature-compensated autonomous disassembly of KaiB–KaiC
complex |
6 |
1602 |
| Hideaki Yoshimura Biophys. Physicobiol. Vol. 19, e190007
(2022) |
Triple-color single-molecule imaging for analysis of the role of receptor
oligomers in signal transduction |
0 |
2113 |
| Hiroaki Yokota Biophys. Physicobiol. Vol. 19, e190006 (2022) |
Quantitative and kinetic single-molecule analysis of DNA unwinding
by Escherichia coli UvrD helicase |
4 |
1848 |
| Taro Furubayashi et al. Biophys. Physicobiol. Vol. 19, e190005
(2022) |
How evolution builds up complexity?: In vitro evolution approaches to
witness complexification in artificial molecular replication systems |
0 |
2210 |
| Satoru Tokutomi et al. Biophys. Physicobiol. Vol. 19, e190004
(2022) |
A variety of photoreceptors and the frontiers of optogenetics |
0 |
1898 |
| Yuka Oka et al. Biophys. Physicobiol. Vol. 19, e190003 (2022) |
Ionic strength-sensitive and pH-insensitive interactions between
C-reactive protein (CRP) and an anti-CRP antibody |
7 |
2129 |
| Ryohei Kondo et al. Biophys. Physicobiol. Vol. 19, e190002
(2022) |
Information quantity for secondary structure propensities of protein
subsequences in the Protein Data Bank |
0 |
1502 |
| Takashi Fujishiro et al. Biophys. Physicobiol. Vol. 19, e190001
(2022) |
Structural diversity of cysteine desulfurases involved in iron-sulfur
cluster biosynthesis |
19 |
1777 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S076 (2021) |
Appendix |
0 |
163 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S066 (2021) |
Chapter 8: Brownian Motion |
0 |
222 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S056 (2021) |
Chapter 7: Local Temperature |
0 |
229 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S044 (2021) |
Part II. Application of Statistical Mechanics in Biological Phenomena6.1 |
0 |
318 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S041 (2021) |
Chapter 5: Summary of Part I |
0 |
323 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S035 (2021) |
Chapter 4: Always “Now” is the Peak Moment |
0 |
295 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S025 (2021) |
Chapter 3: Changing the Rules |
0 |
328 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S012 (2021) |
Chapter 2: Consumption Tax in the World of Molecules |
0 |
503 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S008 (2021) |
Part I. Experiencing the basics of statistical mechanics using your hands |
0 |
439 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S003 (2021) |
Oosawa’s Preface |
0 |
480 |
| Editorial team for the Special Issue on Oosawa’s Lectures
Biophys. Physicobiol. Vol. 18S, S001 (2021) |
Editorial: English translation of “The Oosawa Lectures on DIY Statistical
Mechanics” |
1 |
711 |
| Takashi Kikukawa Biophys. Physicobiol. Vol. 18, 317 (2021) |
Unique Cl– pump rhodopsin with close similarity to H+ pump
rhodopsin |
2 |
551 |
| Hiroaki Hata et al. Biophys. Physicobiol. Vol. 18, 305 (2021) |
Binding free energy of protein/ligand complexes calculated using
dissociation Parallel Cascade Selection Molecular Dynamics and Markov state
model |
53 |
1647 |
| Takayoshi Tsubo Biophys. Physicobiol. Vol. 18, 290 (2021) |
Analysis of the mechanism of synaptic integration focusing on the charge
held in the spine |
1 |
934 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 18, 289 (2021) |
Announcement of BPPB paper awards 2021 |
0 |
405 |
| Naoki Yamamoto et al. Biophys. Physicobiol. Vol. 18, 284 (2021) |
Protein hydration and its freezing phenomena: Toward the application for
cell freezing and frozen food storage |
0 |
647 |
| Katsumasa Irie Biophys. Physicobiol. Vol. 18, 274 (2021) |
The insights into calcium ion selectivity provided by ancestral
prokaryotic ion channels |
4 |
782 |
| Tony Z. Jia et al. Biophys. Physicobiol. Vol. 18, 269 (2021) |
Increasing complexity of primitive compartments |
3 |
785 |
| Shuji Akiyama et al. Biophys. Physicobiol. Vol. 18, 267 (2021) |
Beyond multi-disciplinary and cross-scale analyses of the cyanobacterial
circadian clock system |
0 |
587 |
| Haruki Nakamura et al. Biophys. Physicobiol. Vol. 18, 265 (2021) |
Technical development and sharing of high-resolution cryo-electron
microscopes |
0 |
634 |
| Akihiko Ishijima et al. Biophys. Physicobiol. Vol. 18, 263
(2021) |
Information biophysics of gradient sensing in organisms |
0 |
595 |
| Takuma Sugi et al. Biophys. Physicobiol. Vol. 18, 254 (2021) |
Collective pattern formations of animals in active matter physics |
2 |
881 |
| Chan-Gi Pack Biophys. Physicobiol. Vol. 18, 244 (2021) |
Application of quantitative cell imaging using label-free optical
diffraction tomography |
2 |
789 |
| Kumiko Hayashi et al. Biophys. Physicobiol. Vol. 18, 241 (2021) |
Japan-US symposium on cytoskeletal motor proteins and their associated
proteins |
2 |
598 |
| Atsushi Hijikata et al. Biophys. Physicobiol. Vol. 18, 226
(2021) |
Current status of structure-based drug repurposing against COVID-19 by
targeting SARS-CoV-2 proteins |
8 |
926 |
| Hiroyuki Noji Biophys. Physicobiol. Vol. 18, 224 (2021) |
Greetings from the President of Biophysical Society of Japan:
Traditionally open culture for fostering creative biophysics |
0 |
478 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 18, 223 (2021) |
Improve publishing procedures of Biophysics and Physicobiology |
0 |
384 |
| Daisuke Kuroda et al. Biophys. Physicobiol. Vol. 18, 215 (2021) |
Microsecond molecular dynamics suggest that a non-synonymous mutation,
frequently observed in patients with mild symptoms in Tokyo, alters dynamics
of the SARS-CoV-2 main protease |
3 |
836 |
| Kenji Mishima et al. Biophys. Physicobiol. Vol. 18, 196 (2021) |
Estimation of the relative contributions to the electronic energy transfer
rates based on Förster theory: The case of C-phycocyanin chromophores |
4 |
955 |
| Kyoko Shinzawa-Itoh et al. Biophys. Physicobiol. Vol. 18, 186
(2021) |
Biochemical and crystallographic studies of monomeric and dimeric bovine
cytochrome c oxidase |
4 |
602 |
| Izuru Kawamura et al. Biophys. Physicobiol. Vol. 18, 177 (2021) |
Structure of a retinal chromophore of dark-adapted middle rhodopsin as
studied by solid-state nuclear magnetic resonance spectroscopy |
6 |
1029 |
| Masayuki Oda Biophys. Physicobiol. Vol. 18, 168 (2021) |
Structural basis for Ca2+-dependent catalysis of a cutinase-like enzyme
and its engineering: application to enzymatic PET depolymerization |
13 |
898 |
| Koya Sakuma Biophys. Physicobiol. Vol. 18, 159 (2021) |
Limitations of the ABEGO-based backbone design: ambiguity between
αα-corner and αα-hairpin |
0 |
1219 |
| Takamitsu J Morikawa et al. Biophys. Physicobiol. Vol. 18, 145
(2021) |
Glycine insertion modulates the fluorescence properties of Aequorea
victoria green fluorescent protein and its variants in their ambient
environment |
1 |
874 |
| Udoy S. Basak et al. Biophys. Physicobiol. Vol. 18, 131 (2021) |
Transfer entropy dependent on distance among agents in quantifying
leader-follower relationships |
7 |
1256 |
| Masashi Unno et al. Biophys. Physicobiol. Vol. 18, 127 (2021) |
Spectroscopic approach for exploring structure and function of
photoreceptor proteins |
2 |
762 |
| Yusuke Sato et al. Biophys. Physicobiol. Vol. 18, 116 (2021) |
DNA nanotechnology provides an avenue for the construction of programmable
dynamic molecular systems |
3 |
1542 |
| Teppei Sugimoto et al. Biophys. Physicobiol. Vol. 18, 108 (2021) |
Role of Thr82 for the unique photochemistry of TAT rhodopsin |
9 |
907 |
| Ryota Kojima et al. Biophys. Physicobiol. Vol. 18, 96 (2021) |
A measure for the identification of preferred particle orientations in
cryo-electron microscopy data: A simulation study |
3 |
807 |
| Seine A. Shintani Biophys. Physicobiol. Vol. 18, 85 (2021) |
Effects of high-pressure treatment on the structure and function of
myofibrils |
6 |
763 |
| Maki Kawasaki et al. Biophys. Physicobiol. Vol. 18, 78 (2021) |
DNA-binding function of c-Myb R2R3 around thermal denaturation temperature |
4 |
718 |
| Katsumi Omagari et al. Biophys. Physicobiol. Vol. 18, 67 (2021) |
Application of fluorescent-based technology detecting protein-protein
interactions to monitor the binding of hepatitis B virus X protein to
DNA-damage-binding protein 1 |
1 |
741 |
| Masahiro Kinoshita Biophys. Physicobiol. Vol. 18, 60 (2021) |
On the functioning mechanism of an ATP-driven molecular motor |
3 |
782 |
| Yasumichi Takase et al. Biophys. Physicobiol. Vol. 18, 50 (2021) |
Structure elements can be predicted using the contact volume among protein
residues |
1 |
809 |
| Shunpei Hanai et al. Biophys. Physicobiol. Vol. 18, 40 (2021) |
Light-induced difference FTIR spectroscopy of primate blue-sensitive
visual pigment at 163 K |
6 |
823 |
| Yuta Kyosei et al. Biophys. Physicobiol. Vol. 18, 28 (2021) |
Antigen tests for COVID-19 |
32 |
2646 |
| Aya Okuda et al. Biophys. Physicobiol. Vol. 18, 16 (2021) |
Deuteration Aiming for Neutron Scattering |
10 |
1264 |
| Mikio Kataoka et al. Biophys. Physicobiol. Vol. 18, 13 (2021) |
Expanding horizons of biosciences by light-control |
0 |
619 |
| Ryo Yoshizawa et al. Biophys. Physicobiol. Vol. 18, 1 (2021) |
Biphasic spatiotemporal regulation of GRB2 dynamics by p52SHC for
transient RAS activation |
8 |
878 |
| Junichi Higo et al. Biophys. Physicobiol. Vol. 17, 161 (2020) |
GA-guided mD-VcMD: A genetic-algorithm-guided method for multi-dimensional
virtual-system coupled molecular dynamics |
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| Masaru Hoshino Biophys. Physicobiol. Vol. 17, 159 (2020) |
Letter to the Editor: A still unresolved mystery in the interaction
between intrinsically disordered proteins: How do they recognize multiple
target proteins? A commentary on “No folding upon binding of intrinsically
disordered proteins: Still interesting but not unique and novel. by Sigalov,
A. B., Biophysics and Physicobiology 17, 156–158 (2020). DOI:
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| Alexander B. Sigalov Biophys. Physicobiol. Vol. 17, 156 (2020) |
Letter to the Editor: No folding upon binding of intrinsically disordered
proteins: Still interesting but not unique and novel. A commentary on “A
novel mode of interaction between intrinsically disordered proteins. by
Hibino, E. and Hoshino, M., Biophysics and Physicobiology 17, 86–93 (2020).
DOI: 10.2142/biophysico.BSJ-2020012” |
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Editorial |
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| Hiroto Anbo et al. Biophys. Physicobiol. Vol. 17, 147 (2020) |
NeProc predicts binding segments in intrinsically disordered regions
without learning binding region sequences |
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| Kota Kasahara et al. Biophys. Physicobiol. Vol. 17, 140 (2020) |
myPresto/omegagene 2020: a molecular dynamics simulation engine for
virtual-system coupled sampling |
11 |
773 |
| Yuki Kogo et al. Biophys. Physicobiol. Vol. 17, 132 (2020) |
Rapid differentiation of human dental pulp stem cells to neuron-like cells
by high K+ stimulation |
14 |
829 |
| Akihiko Ishijima et al. Biophys. Physicobiol. Vol. 17, 130
(2020) |
Information physics of living matters |
0 |
835 |
| Kazuma Yasuhara et al. Biophys. Physicobiol. Vol. 17, 125 (2020) |
New lipid membrane technologies for reconstitution, analysis, and
utilization of ‘living’ membrane proteins |
2 |
829 |
| Ryuma Sato et al. Biophys. Physicobiol. Vol. 17, 113 (2020) |
Theoretical insights into the DNA repair function of Arabidopsis thaliana
cryptochrome-DASH |
4 |
819 |
| Jia-Siang Sum et al. Biophys. Physicobiol. Vol. 17, 103 (2020) |
Spectroscopic and structural characteristics of a dual-light sensor
protein, PYP-phytochrome related protein |
1 |
683 |
| Keiko Nonomura et al. Biophys. Physicobiol. Vol. 17, 100 (2020) |
Cell mechanosensing underlies homeostasis of multicellular systems |
2 |
592 |
| Takeharu Nagai et al. Biophys. Physicobiol. Vol. 17, 98 (2020) |
Detection of singularity in immunity and cancer by novel imaging
techniques |
2 |
729 |
| Hitomi Sawai et al. Biophys. Physicobiol. Vol. 17, 94 (2020) |
Integrated bio-metal science: New frontiers of bio-metal science opened
with cutting-edge techniques |
0 |
689 |
| Emi Hibino et al. Biophys. Physicobiol. Vol. 17, 86 (2020) |
A novel mode of interaction between intrinsically disordered proteins |
7 |
1051 |
| Daniel Dai et al. Biophys. Physicobiol. Vol. 17, 71 (2020) |
Identification and mapping of central pair proteins by proteomic analysis |
22 |
1432 |
| Yujiro Nagasaka et al. Biophys. Physicobiol. Vol. 17, 59 (2020) |
Gate-keeper of ion transport—a highly conserved helix-3 tryptophan in a
channelrhodopsin chimera, C1C2/ChRWR |
4 |
957 |
| Akihiko Nakamura et al. Biophys. Physicobiol. Vol. 17, 51 (2020) |
Crystalline chitin hydrolase is a burnt-bridge Brownian motor |
6 |
1019 |
| Satoshi Toda Biophys. Physicobiol. Vol. 17, 42 (2020) |
Synthetic tissue engineering: Programming multicellular self-organization
by designing customized cell-cell communication |
6 |
1374 |
| Yudai Yamaoki et al. Biophys. Physicobiol. Vol. 17, 36 (2020) |
Observation of nucleic acids inside living human cells by in-cell NMR
spectroscopy |
9 |
955 |
| Damien Hall Biophys. Physicobiol. Vol. 17, 30 (2020) |
A simple method for modeling amyloid kinetics featuring position biased
fiber breakage |
4 |
790 |
| Takuya Yoshizawa et al. Biophys. Physicobiol. Vol. 17, 25 (2020) |
Effect of nuclear import receptors on liquid–liquid phase separation |
5 |
1327 |
| Natsuki Mukuta et al. Biophys. Physicobiol. Vol. 17, 14 (2020) |
Potential energy landscape and thermodynamic transitions of coarse-grained
protein models revealed by the multicanonical generalized hybrid Monte Carlo
method |
2 |
855 |
| Shumpei Matsuno et al. Biophys. Physicobiol. Vol. 17, 2 (2020) |
Multidomain protein structure prediction using information about residues
interacting on multimeric protein interfaces |
3 |
837 |
| Haruki Nakamura Biophys. Physicobiol. Vol. 17, 1 (2020) |
Editorial |
0 |
500 |
| Lihsin Lee Biophys. Physicobiol. Vol. 16, 490 (2019) |
Bohr equation and the lost allosteric Bohr effects in symmetry |
2 |
599 |
| Itaru Onishi et al. Biophys. Physicobiol. Vol. 16, 485 (2019) |
A tool written in Scala for preparation and analysis in MD simulation and
3D-RISM calculation of biomolecules |
1 |
537 |
| Bang-Chieh Huang et al. Biophys. Physicobiol. Vol. 16, 473
(2019) |
Molecular dynamics simulations and linear response theories jointly
describe biphasic responses of myoglobin relaxation and reveal evolutionarily
conserved frequent communicators |
4 |
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| Nobuhiko Kajinami et al. Biophys. Physicobiol. Vol. 16, 466
(2019) |
Polymer brush in articular cartilage lubrication: Nanoscale modelling and
simulation |
9 |
627 |
| Teikichi Ikura et al. Biophys. Physicobiol. Vol. 16, 452 (2019) |
Mutational effects of Cys113 on structural dynamics of Pin1 |
3 |
544 |
| Jean-François Gibrat Biophys. Physicobiol. Vol. 16, 444 (2019) |
On the use of algebraic topology concepts to check the consistency of
genome assembly |
0 |
515 |
| Atsushi Tokuhisa Biophys. Physicobiol. Vol. 16, 430 (2019) |
Characterization of X-ray diffraction intensity function from a biological
molecule for single particle imaging |
2 |
429 |
| Yutaka Maruyama et al. Biophys. Physicobiol. Vol. 16, 407 (2019) |
Analysis of molecular dynamics simulations of 10-residue peptide,
chignolin, using statistical mechanics: Relaxation mode analysis and
three-dimensional reference interaction site model theory |
6 |
907 |
| Takeshi Kawabata Biophys. Physicobiol. Vol. 16, 391 (2019) |
Detection of cave pockets in large molecules: Spaces into which internal
probes can enter, but external probes from outside cannot |
27 |
637 |
| Toru Ekimoto et al. Biophys. Physicobiol. Vol. 16, 377 (2019) |
Combination of coarse-grained molecular dynamics simulations and
small-angle X-ray scattering experiments |
3 |
803 |
| Miki Nakano et al. Biophys. Physicobiol. Vol. 16, 367 (2019) |
Parameter optimization for 3D-reconstruction from XFEL diffraction
patterns based on Fourier slice matching |
2 |
525 |
| Yuko Okamoto Biophys. Physicobiol. Vol. 16, 344 (2019) |
Protein structure predictions by enhanced conformational sampling methods |
4 |
754 |
| Hidetoshi Kono et al. Biophys. Physicobiol. Vol. 16, 337 (2019) |
Free energy profile for unwrapping outer superhelical turn of CENP-A
nucleosome |
8 |
563 |
| Ruth Veevers et al. Biophys. Physicobiol. Vol. 16, 328 (2019) |
Methodological improvements for the analysis of domain movements in large
biomolecular complexes |
32 |
1014 |
| Takahisa Yamato et al. Biophys. Physicobiol. Vol. 16, 322 (2019) |
Normal mode analysis and beyond |
11 |
1075 |
| Ai Shinobu et al. Biophys. Physicobiol. Vol. 16, 310 (2019) |
Building a macro-mixing dual‑basin Gō model using the Multistate Bennett
Acceptance Ratio |
5 |
747 |
| Rie Koga et al. Biophys. Physicobiol. Vol. 16, 304 (2019) |
Consistency principle for protein design |
10 |
1161 |
| Kazuhiro Takemura et al. Biophys. Physicobiol. Vol. 16, 295
(2019) |
More efficient screening of protein-protein complex model structures for
reducing the number of candidates |
4 |
668 |
| Arina Afanasyeva et al. Biophys. Physicobiol. Vol. 16, 287
(2019) |
Prediction of the secondary structure of short DNA aptamers |
29 |
1699 |
| Ryotaro Koike et al. Biophys. Physicobiol. Vol. 16, 280 (2019) |
All Atom Motion Tree detects side chain-related motions and their coupling
with domain motion in proteins |
2 |
519 |
| Mikio Kataoka et al. Biophys. Physicobiol. Vol. 16, 274 (2019) |
Mechanism of the light-driven proton pump of bacteriorhodopsin based on
the consistency principle |
6 |
629 |
| Sarbani Chattopadhyaya et al. Biophys. Physicobiol. Vol. 16, 264
(2019) |
A collective motion description of tubulin βT7 loop dynamics |
9 |
524 |
| Nobuhiro Go Biophys. Physicobiol. Vol. 16, 256 (2019) |
Snake cube puzzle and protein folding |
4 |
1743 |
| Shoji Takada Biophys. Physicobiol. Vol. 16, 248 (2019) |
Gō model revisited |
40 |
1589 |
| Yasumasa Joti et al. Biophys. Physicobiol. Vol. 16, 240 (2019) |
Cancellation between auto- and mutual correlation contributions of
protein/water dynamics in terahertz time-domain spectra |
2 |
478 |
| Kei Moritsugu et al. Biophys. Physicobiol. Vol. 16, 232 (2019) |
Allosteric response to ligand binding: Molecular dynamics study of the
N-terminal domains in IP3 receptor |
5 |
490 |
| Hiroshi Wako et al. Biophys. Physicobiol. Vol. 16, 220 (2019) |
Dynamic properties of oligomers that characterize low-frequency normal
modes |
2 |
466 |
| Hiroshi Nakagawa et al. Biophys. Physicobiol. Vol. 16, 213
(2019) |
How can we derive hydration water dynamics with incoherent neutron
scattering and molecular dynamics simulation? |
7 |
618 |
| Shigeru Endo et al. Biophys. Physicobiol. Vol. 16, 205 (2019) |
Normal mode analysis calculation for a full-atom model with a smaller
number of degrees of freedom for huge protein molecules |
0 |
474 |
| Tatsushi Nishimoto et al. Biophys. Physicobiol. Vol. 16, 196
(2019) |
Replica exchange molecular dynamics simulation study on the mechanism of
desiccation-induced structuralization of an intrinsically disordered peptide
as a model of LEA proteins |
6 |
736 |
| Nobuyuki Matubayasi et al. Biophys. Physicobiol. Vol. 16, 185
(2019) |
Energetics of cosolvent effect on peptide aggregation |
5 |
796 |
| Katsuhide Yutani et al. Biophys. Physicobiol. Vol. 16, 176
(2019) |
Confirmation of the formation of salt bridges in the denatured state of
CutA1 protein using molecular dynamics simulations |
4 |
510 |
| Mikio Kataoka et al. Biophys. Physicobiol. Vol. 16, 173 (2019) |
Forewords to the special issue “Progress of theoretical and computational
biophysics—in honor of Professor Nobuhiro Go’s outstanding contribution on
the occasion of his 80th birthday” |
0 |
491 |
| Kei Shimizu et al. Biophys. Physicobiol. Vol. 16, 167 (2019) |
Food deprivation changes chemotaxis behavior in Caenorhabditis elegans |
6 |
766 |
| Takeo Yamaguchi et al. Biophys. Physicobiol. Vol. 16, 158 (2019) |
ATP effects on response of human erythrocyte membrane to high pressure |
11 |
502 |
| Junichi Kaneshiro et al. Biophys. Physicobiol. Vol. 16, 147
(2019) |
Second harmonic generation polarization microscopy as a tool for protein
structure analysis |
7 |
1250 |
| Atsuko Nakanishi et al. Biophys. Physicobiol. Vol. 16, 140
(2019) |
Cryo-EM studies of the rotary H+-ATPase/synthase from Thermus thermophilus |
8 |
945 |
| Etsuro Ito et al. Biophys. Physicobiol. Vol. 16, 132 (2019) |
A novel role of oxytocin: Oxytocin-induced well-being in humans |
36 |
2430 |
| Kei Odai et al. Biophys. Physicobiol. Vol. 16, 127 (2019) |
Ab-initio study of pyrrole ring deformation in the indole group of 5-HT
interacting with water molecules |
3 |
462 |
| Koichi Nakajo Biophys. Physicobiol. Vol. 16, 121 (2019) |
Gating modulation of the KCNQ1 channel by KCNE proteins studied by
voltage-clamp fluorometry |
5 |
769 |
| Yosuke Tashiro et al. Biophys. Physicobiol. Vol. 16, 114 (2019) |
Targeted delivery using membrane vesicles in prokaryotes |
15 |
1085 |
| Atsushi Matsumoto Biophys. Physicobiol. Vol. 16, 108 (2019) |
Dynamic analysis of ribosome by a movie made from many three-dimensional
electron-microscopy density maps |
0 |
698 |
| Hiroshi Koyama et al. Biophys. Physicobiol. Vol. 16, 89 (2019) |
Biophysics in oviduct: Planar cell polarity, cilia, epithelial fold and
tube morphogenesis, egg dynamics |
40 |
1308 |
| Yuhi Hosoe et al. Biophys. Physicobiol. Vol. 16, 80 (2019) |
Structural and functional properties of Grb2 SH2 dimer in CD28 binding |
15 |
878 |
| Mika Sakamoto et al. Biophys. Physicobiol. Vol. 16, 68 (2019) |
Relationship between conformation shift and disease related variation
sites in ATP-binding cassette transporter proteins |
5 |
785 |
| Kenichi Kouyama et al. Biophys. Physicobiol. Vol. 16, 59 (2019) |
Single-particle analysis of full-length human poly(ADP-ribose) polymerase
1 |
7 |
974 |
| Kunihiko Gekko Biophys. Physicobiol. Vol. 16, 41 (2019) |
Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy
in structural biology: an overview |
12 |
1048 |
| Shuya Ishii et al. Biophys. Physicobiol. Vol. 16, 28 (2019) |
Functional significance of HCM mutants of tropomyosin, V95A and D175N,
studied with in vitro motility assays |
6 |
906 |
| Shohei Konno et al. Biophys. Physicobiol. Vol. 16, 18 (2019) |
Uncovering dehydration in cytochrome c refolding from urea- and guanidine
hydrochloride-denatured unfolded state by high pressure spectroscopy |
5 |
827 |
| Hironobu Nogucci Biophys. Physicobiol. Vol. 16, 9 (2019) |
Dynamic and static analyses of glass-like properties of three-dimensional
tissues |
0 |
682 |
| Kentaro Ozawa et al. Biophys. Physicobiol. Vol. 16, 1 (2019) |
Millimeter-sized belt-like pattern formation of actin filaments in
solution by interacting with surface myosin in vitro |
3 |
999 |
| Marzieh Alishahi et al. Biophys. Physicobiol. Vol. 15, 255
(2018) |
Forced diffusion of water molecules through aquaporin-5 biomembrane; a
molecular dynamics study |
7 |
677 |
| Masahiro Nishimura et al. Biophys. Physicobiol. Vol. 15, 251
(2018) |
Crystallographic analysis of the overlapping dinucleosome as a novel
chromatin unit |
0 |
477 |
| Shuji Kawasaki et al. Biophys. Physicobiol. Vol. 15, 235 (2018) |
Data analytic study of the homothermal maintenance mechanism of Skunk
Cabbage: Capturing pre-equilibrium characteristics using extended poisson
model |
0 |
656 |
| Takeharu Sekiguchi et al. Biophys. Physicobiol. Vol. 15, 229
(2018) |
Fluorescent nanodiamonds as a robust temperature sensor inside a single
cell |
56 |
2095 |
| Takayoshi Tsubo et al. Biophys. Physicobiol. Vol. 15, 214 (2018) |
Verification of the effect of the axon fluid as a highly dielectric medium
in the high-speed conduction of action potentials using a novel axon
equivalent circuit |
5 |
550 |
| Vrushali C. Hingane et al. Biophys. Physicobiol. Vol. 15, 204
(2018) |
Inhibition of crude viper venom action by silver nanoparticles: A
biophysical and biochemical study |
11 |
775 |
| Hiroyuki Kitahata et al. Biophys. Physicobiol. Vol. 15, 196
(2018) |
Mathematical approach to unpinning of spiral waves anchored to an obstacle
with high-frequency pacing |
2 |
507 |
| Kazuhiro Maeshima et al. Biophys. Physicobiol. Vol. 15, 189
(2018) |
Chromatin as a nuclear spring |
24 |
1069 |
| Keiichi Kojima et al. Biophys. Physicobiol. Vol. 15, 179 (2018) |
Mutational analysis of the conserved carboxylates of anion
channelrhodopsin-2 (ACR2) expressed in Escherichia coli and their roles in
anion transport |
11 |
763 |
| Hiroyuki Terashima et al. Biophys. Physicobiol. Vol. 15, 173
(2018) |
Novel insight into an energy transduction mechanism of the bacterial
flagellar type III protein export |
3 |
587 |
| Ryosuke Iwai et al. Biophys. Physicobiol. Vol. 15, 165 (2018) |
Influence of various parameters in the replica-exchange molecular dynamics
method: Number of replicas, replica-exchange frequency, and thermostat
coupling time constant |
5 |
829 |
| Tadashi Nakashima et al. Biophys. Physicobiol. Vol. 15, 159
(2018) |
Earthworm individualities when facing a conflict between turn alternation
and aversive learning |
6 |
840 |
| Fumio Oosawa Biophys. Physicobiol. Vol. 15, 151 (2018) |
My various thoughts on actin |
2 |
870 |
| Sumita Das et al. Biophys. Physicobiol. Vol. 15, 136 (2018) |
Single-molecular and ensemble-level oscillations of cyanobacterial
circadian clock |
5 |
704 |
| Hitoshi Aonuma et al. Biophys. Physicobiol. Vol. 15, 129 (2018) |
Comparison of brain monoamine content in three populations of Lymnaea that
correlates with taste-aversive learning ability |
12 |
499 |
| Yoshiaki Kinosita et al. Biophys. Physicobiol. Vol. 15, 121
(2018) |
Cross-kymography analysis to simultaneously quantify the function and
morphology of the archaellum |
5 |
640 |
| Hiroyuki Iwamoto Biophys. Physicobiol. Vol. 15, 111 (2018) |
Effects of myosin inhibitors on the X-ray diffraction patterns of relaxed
and calcium-activated rabbit skeletal muscle fibers |
12 |
646 |
| Masami Ikeda et al. Biophys. Physicobiol. Vol. 15, 104 (2018) |
SEVENS: a database for comprehensive GPCR genes obtained from genomes |
3 |
1102 |
| Akiko Higuchi et al. Biophys. Physicobiol. Vol. 15, 94 (2018) |
iMusta4SLC: Database for the structural property and variations of solute
carrier transporters |
8 |
692 |
| Miki H. Maeda et al. Biophys. Physicobiol. Vol. 15, 87 (2018) |
Chemical curation to improve data accuracy: recent development of the
3DMET database |
3 |
498 |
| Kei Yura Biophys. Physicobiol. Vol. 15, 86 (2018) |
Preface of Special Issue “Databases” |
0 |
460 |
| Shigeki Mitaku et al. Biophys. Physicobiol. Vol. 15, 75 (2018) |
Biological meaning of “habitable zone” in nucleotide composition space |
4 |
631 |
| Keisuke Arikawa Biophys. Physicobiol. Vol. 15, 58 (2018) |
Theoretical framework for analyzing structural compliance properties of
proteins |
2 |
630 |
| Ken H. Nagai Biophys. Physicobiol. Vol. 15, 51 (2018) |
Collective motion of rod-shaped self-propelled particles through collision |
6 |
1347 |
| Hiroki Nagashima et al. Biophys. Physicobiol. Vol. 15, 45 (2018) |
Magnetic structure of manganese cluster in photosystem II investigated by
electron paramagnetic resonance |
5 |
737 |
| Mitsuhiko Odera et al. Biophys. Physicobiol. Vol. 15, 33 (2018) |
Molecular dynamics simulation study on the structural instability of the
most common cystic fibrosis-associated mutant ΔF508-CFTR |
13 |
1056 |
| Takashi Fujii et al. Biophys. Physicobiol. Vol. 15, 28 (2018) |
Evidence for the hook supercoiling mechanism of the bacterial flagellum |
12 |
788 |
| Ryuma Sato et al. Biophys. Physicobiol. Vol. 15, 18 (2018) |
The binding structure and affinity of photodamaged duplex DNA with members
of the photolyase/cryptochrome family: A computational study |
6 |
691 |
| Yoichi Nakatani et al. Biophys. Physicobiol. Vol. 15, 8 (2018) |
Quantitative analyses of the equilibria among DNA complexes of a
blue-light-regulated bZIP module, Photozipper |
5 |
665 |
| Akira Kitamura et al. Biophys. Physicobiol. Vol. 15, 1 (2018) |
Determination of diffusion coefficients in live cells using fluorescence
recovery after photobleaching with wide-field fluorescence microscopy |
22 |
1349 |
| Daisuke Miyashiro et al. Biophys. Physicobiol. Vol. 14, 207
(2017) |
Radial stiffness characteristics of the overlap regions of sarcomeres in
isolated skeletal myofibrils in pre-force generating state |
4 |
517 |
| Hiroshi Hashimoto et al. Biophys. Physicobiol. Vol. 14, 199
(2017) |
Structural basis for the molecular interactions in DNA damage tolerances |
3 |
522 |
| Hiroyuki Terashima et al. Biophys. Physicobiol. Vol. 14, 191
(2017) |
Structural differences in the bacterial flagellar motor among bacterial
species |
44 |
1253 |
| Kazuho Yoshida et al. Biophys. Physicobiol. Vol. 14, 183 (2017) |
Chimeric microbial rhodopsins for optical activation of Gs-proteins |
3 |
592 |
| Shota Kondo et al. Biophys. Physicobiol. Vol. 14, 173 (2017) |
Analysis of the GTPase motif of FlhF in the control of the number and
location of polar flagella in Vibrio alginolyticus |
15 |
525 |
| Naoki Arai et al. Biophys. Physicobiol. Vol. 14, 161 (2017) |
Analysis of an ATP-induced conformational transition of ABC transporter
MsbA using a coarse-grained model |
2 |
546 |
| Eiji Yamamoto Biophys. Physicobiol. Vol. 14, 153 (2017) |
Computational and theoretical approaches for studies of a lipid
recognition protein on biological membranes |
3 |
739 |
| Toshifumi Kumai Biophys. Physicobiol. Vol. 14, 147 (2017) |
Isn’t there an inductance factor in the plasma membrane of nerves? |
8 |
566 |
| Ayumi Hashimoto et al. Biophys. Physicobiol. Vol. 14, 137 (2017) |
The change of picrotoxin-induced epileptiform discharges to the beta
oscillation by carbachol in rat hippocampal slices |
9 |
717 |
| Mikihiro Shibata et al. Biophys. Physicobiol. Vol. 14, 127
(2017) |
High-speed atomic force microscopy imaging of live mammalian cells |
38 |
1631 |
| Hiroaki Machiyama et al. Biophys. Physicobiol. Vol. 14, 119
(2017) |
The use of a genetically encoded molecular crowding sensor in various
biological phenomena |
11 |
1026 |
| Yutaro Yamada et al. Biophys. Physicobiol. Vol. 14, 111 (2017) |
Demonstration of correlative atomic force and transmission electron
microscopy using actin cytoskeleton |
2 |
1056 |
| Akira R. Kinjo Biophys. Physicobiol. Vol. 14, 99 (2017) |
Monte Carlo simulation of a statistical mechanical model of multiple
protein sequence alignment |
2 |
700 |
| Souhei Sakata et al. Biophys. Physicobiol. Vol. 14, 85 (2017) |
Domain-to-domain coupling in voltage-sensing phosphatase |
5 |
852 |
| Ryo Yoshizawa et al. Biophys. Physicobiol. Vol. 14, 75 (2017) |
Single-molecule fluorescence imaging of RalGDS on cell surfaces during
signal transduction from Ras to Ral |
17 |
855 |
| Kotomi Shibata et al. Biophys. Physicobiol. Vol. 14, 67 (2017) |
Mutations in the SH1 helix alter the thermal properties of myosin II |
0 |
732 |
| Yumeka Yamauchi et al. Biophys. Physicobiol. Vol. 14, 57 (2017) |
Molecular properties of a DTD channelrhodopsin from Guillardia theta |
35 |
1089 |
| Jun Tamogami et al. Biophys. Physicobiol. Vol. 14, 49 (2017) |
Existence of two O-like intermediates in the photocycle of Acetabularia
rhodopsin II, a light-driven proton pump from a marine alga |
6 |
735 |
| Noriyo Mitome et al. Biophys. Physicobiol. Vol. 14, 41 (2017) |
Identification of aqueous access residues of the sodium half channel in
transmembrane helix 5 of the Fo-a subunit of Propionigenium modestum ATP
synthase |
4 |
827 |
| Yohei Murakami et al. Biophys. Physicobiol. Vol. 14, 29 (2017) |
Model-based control of the temporal patterns of intracellular signaling in
silico |
2 |
781 |
| Kazuki Takahashi et al. Biophys. Physicobiol. Vol. 14, 23 (2017) |
Enhanced mRNA-protein fusion efficiency of a single-domain antibody by
selection of mRNA display with additional random sequences in the terminal
translated regions |
6 |
963 |
| Alemeh Zamani et al. Biophys. Physicobiol. Vol. 14, 13 (2017) |
Kinetic characteristics of chimeric channelrhodopsins implicate the
molecular identity involved in desensitization |
7 |
846 |
| Kazuya Suzuki et al. Biophys. Physicobiol. Vol. 14, 1 (2017) |
Mechanical properties of spindle poles are symmetrically balanced |
0 |
818 |
| Keitaro Shibata et al. Biophys. Physicobiol. Vol. 13, 321 (2016) |
Actin binding domain of filamin distinguishes posterior from anterior
actin filaments in migrating Dictyostelium cells |
7 |
729 |
| Ryuma Sato et al. Biophys. Physicobiol. Vol. 13, 311 (2016) |
Theoretical analyses on a flipping mechanism of UV-induced DNA
damage |
9 |
720 |
| Shigeki Mitaku et al. Biophys. Physicobiol. Vol. 13, 305 (2016) |
What parameters characterize “life”? |
4 |
594 |
| Motonori Ota et al. Biophys. Physicobiol. Vol. 13, 295 (2016) |
Itinerary profiling to analyze a large number of protein-folding
trajectories |
3 |
563 |
| Masaki Sasai et al. Biophys. Physicobiol. Vol. 13, 281 (2016) |
Cooperativity and modularity in protein folding |
6 |
863 |
| Hiroshi Wako et al. Biophys. Physicobiol. Vol. 13, 263 (2016) |
Characterization of protein folding by a Φ-value calculation with a
statistical-mechanical model |
3 |
742 |
| Yukio Kobayashi Biophys. Physicobiol. Vol. 13, 251 (2016) |
Statistical mechanics of protein structural transitions: Insights from the
island model |
3 |
684 |
| Mitiko Go Biophys. Physicobiol. Vol. 13, 249 (2016) |
Professor Nobuhiko Saitô’s contribution to statistical mechanics of
biopolymers |
1 |
475 |
| Kei Yura Biophys. Physicobiol. Vol. 13, 245 (2016) |
Obituary: Nobuhiko Saitô, a man who understood protein folding in his own
way |
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Memorial Issue for Professor Nobuhiko Saitô |
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| Yoshihiko Furuike et al. Biophys. Physicobiol. Vol. 13, 235
(2016) |
Accelerating in vitro studies on circadian clock systems using an
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| Yasuhiro Onoue, et al. Biophys. Physicobiol. Vol. 13, 227 (2016) |
Domain-based biophysical characterization of the structural and thermal
stability of FliG, an essential rotor component of the Na+-driven flagellar
motor |
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| Koutaro Nakagome et al. Biophys. Physicobiol. Vol. 13, 217
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Model simulation of the SPOC wave in a bundle of striated myofibrils |
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| Kota Kasahara et al. Biophys. Physicobiol. Vol. 13, 209 (2016) |
myPresto/omegagene: a GPU-accelerated molecular dynamics simulator
tailored for enhanced conformational sampling methods with a non-Ewald
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| Oanh T. P. Kim Biophys. Physicobiol. Vol. 13, 207 (2016) |
Erratum: In silico studies for the interaction of tumor necrosis
factor-alpha (TNF-α) with different saponins from Vietnamese ginseng (Panax
vietnamesis) [Biophysics and Physicobiology, Vol.13, pp.173-180 (2016)] |
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| Masaaki Kotera et al. Biophys. Physicobiol. Vol. 13, 195 (2016) |
Metabolic pathway reconstruction strategies for central metabolism and
natural product biosynthesis |
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| Takako Sakano et al. Biophys. Physicobiol. Vol. 13, 181 (2016) |
Molecular dynamics analysis to evaluate docking pose prediction |
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| Oanh T. P. Kim et al. Biophys. Physicobiol. Vol. 13, 173 (2016) |
In silico studies for the interaction of tumor necrosis factor-alpha
(TNF-α) with different saponins from Vietnamese ginseng (Panax
vietnamesis) |
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| Hiroo Imai et al. Biophys. Physicobiol. Vol. 13, 165 (2016) |
Amino acid residues of bitter taste receptor TAS2R16 that determine
sensitivity in primates to β-glycosides |
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| Kazunori D et al. Biophys. Physicobiol. Vol. 13, 157 (2016) |
Structural characterization of single nucleotide variants at ligand
binding sites and enzyme active sites of human proteins |
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| Tatsuya Okuno et al. Biophys. Physicobiol. Vol. 13, 149 (2016) |
Importance of consensus region of multiple-ligand templates in a virtual
screening method |
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| Tsukasa Nakamura et al. Biophys. Physicobiol. Vol. 13, 139
(2016) |
Effects of the difference in similarity measures on the comparison of
ligand-binding pockets using a reduced vector representation of pockets |
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| Masayuki Oda et al. Biophys. Physicobiol. Vol. 13, 135 (2016) |
Effects of substrate conformational strain on binding kinetics of
catalytic antibodies |
2 |
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| Yuka Suzuki et al. Biophys. Physicobiol. Vol. 13, 127 (2016) |
Conformational shift in the closed state of GroEL induced by ATP-binding
triggers a transition to the open state |
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| Junko Taguchi et al. Biophys. Physicobiol. Vol. 13, 117 (2016) |
Dynamic profile analysis to characterize dynamics-driven allosteric sites
in enzymes |
7 |
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| Nobuyuki Uchikoga et al. Biophys. Physicobiol. Vol. 13, 105
(2016) |
Specificity of broad protein interaction surfaces for proteins with
multiple binding partners |
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| Georgios Iakovou et al. Biophys. Physicobiol. Vol. 13, 97 (2016) |
Determination of locked interfaces in biomolecular complexes using
Haptimol_RD |
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603 |
| Kentaro Ishii et al. Biophys. Physicobiol. Vol. 13, 87 (2016) |
Mass spectrometric analysis of protein–ligand interactions |
36 |
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| Kei Yura Biophys. Physicobiol. Vol. 13, 85 (2016) |
Preface of Special Issue “Protein-Ligand Interactions” |
1 |
575 |
| Wataru Tanaka et al. Biophys. Physicobiol. Vol. 13, 77 (2016) |
Molecular mechanisms of substrate specificities of uridine-cytidine
kinase |
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| Akihiro Okamoto et al. Biophys. Physicobiol. Vol. 13, 71 (2016) |
Cation-limited kinetic model for microbial extracellular electron
transport via an outer membrane cytochrome C complex |
11 |
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| Ryo Iizuka et al. Biophys. Physicobiol. Vol. 13, 63 (2016) |
Chaperonin GroEL uses asymmetric and symmetric reaction cycles in response
to the concentration of non-native substrate proteins |
6 |
1017 |
| Akira R. Kinjo Biophys. Physicobiol. Vol. 13, 45 (2016) |
A unified statistical model of protein multiple sequence alignment
integrating direct coupling and insertions |
5 |
797 |
| Ichiro Yamato et al. Biophys. Physicobiol. Vol. 13, 37 (2016) |
Operating principles of rotary molecular motors: differences between F1
and V1 motors |
7 |
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| Yu Takano et al. Biophys. Physicobiol. Vol. 13, 27 (2016) |
Density functional study of molecular interactions in secondary structures
of proteins |
19 |
825 |
| Hitomi Komatsu et al. Biophys. Physicobiol. Vol. 13, 13 (2016) |
Genetic analysis of revertants isolated from the rod-fragile fliF mutant
of Salmonella |
9 |
1074 |
| Yuki Nakamura et al. Biophys. Physicobiol. Vol. 13, 1 (2016) |
Switching of the positive feedback for RAS activation by a concerted
function of SOS membrane association domains |
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1241 |
| Tatsuhito Matsuo et al. Biophys. Physicobiol. Vol. 12, 145
(2015) |
Structures of the troponin core domain containing the
cardiomyopathy-causing mutants studied by small-angle X-ray scattering |
11 |
645 |
| Daichi Yamada et al. Biophys. Physicobiol. Vol. 12, 139 (2015) |
Structural role of two histidines in the (6-4) photolyase reaction |
7 |
757 |
| Go Watanabe et al. Biophys. Physicobiol. Vol. 12, 131 (2015) |
Analysis of water channels by molecular dynamics simulation of
heterotetrameric sarcosine oxidase |
4 |
772 |
| Marie Kurihara et al. Biophys. Physicobiol. Vol. 12, 121 (2015) |
Microbial rhodopsins: wide distribution, rich diversity and great
potential |
35 |
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| Akira R. Kinjo Biophys. Physicobiol. Vol. 12, 117 (2015) |
Liquid-theory analogy of direct-coupling analysis of multiple-sequence
alignment and its implications for protein structure prediction |
1 |
636 |
| Saki Aoto et al. Biophys. Physicobiol. Vol. 12, 103 (2015) |
Case study on the evolution of hetero-oligomer interfaces based on the
differences in paralogous proteins |
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| Tetsuichi Wazawa et al. Biophys. Physicobiol. Vol. 12, 87 (2015) |
Rotational motion of rhodamine 6G tethered to actin through oligo(ethylene
glycol) linkers studied by frequency-domain fluorescence anisotropy |
2 |
815 |
| Mika Morikawa et al. Biophys. Physicobiol. Vol. 12, 79 (2015) |
Subattomole detection of adiponectin in urine by ultrasensitive ELISA
coupled with thio-NAD cycling |
16 |
840 |
| Yuki Yanagisawa et al. Biophys. Physicobiol. Vol. 12, 69 (2015) |
Time-resolved chemiluminescence of firefly luciferin generated by
dissolving oxygen in deoxygenated dimethyl sulfoxide containing potassium
tert-butoxide |
0 |
608 |
| Takayoshi Tomono et al. Biophys. Physicobiol. Vol. 12, 57 (2015) |
Investigation of glycan evolution based on a comprehensive analysis of
glycosyltransferases using phylogenetic profiling |
6 |
894 |
| Eiji Kanamori et al. Biophys. Physicobiol. Vol. 12, 47 (2015) |
Structural comparison between the open and closed forms of citrate
synthase from Thermus thermophilus HB8 |
7 |
841 |
| Yuji Furutani et al. Biophys. Physicobiol. Vol. 12, 37 (2015) |
Specific interactions between alkali metal cations and the KcsA channel
studied using ATR-FTIR spectroscopy |
12 |
869 |
| Takumi Koshiba Biophys. Physicobiol. Vol. 12, 31 (2015) |
Protein-protein interactions of mitochondrial-associated protein via
bioluminescence resonance energy transfer |
1 |
666 |
| Hitomi Nakashima et al. Biophys. Physicobiol. Vol. 12, 21 (2015) |
The molecular dynamics of crawling migration in microtubule-disrupted
keratocytes |
4 |
739 |
| Satoru Okuda et al. Biophys. Physicobiol. Vol. 12, 13 (2015) |
Three-dimensional vertex model for simulating multicellular
morphogenesis |
43 |
2226 |
| Koji Oda et al. Biophys. Physicobiol. Vol. 12, 1 (2015) |
Physicochemical origin of high correlation between thermal stability of a
protein and its packing efficiency: a theoretical study for staphylococcal
nuclease mutants |
12 |
909 |
| Saeko Yanaka et al. Biophys. Vol. 11, 103 (2015) |
Revealing the peptide presenting process of human leukocyte antigen
through the analysis of fluctuation |
0 |
2100 |
| Fumihiro Motojima Biophys. Vol. 11, 93 (2015) |
How do chaperonins fold protein? |
13 |
2487 |
| Masashi K. Kajita et al. Biophys. Vol. 11, 85 (2015) |
Experimental and theoretical bases for mechanisms of antigen
discrimination by T cells |
2 |
2659 |
| Mukaiyama et al. Biophys. Vol. 11, 79 (2015) |
A protocol for preparing nucleotide-free KaiC monomer |
4 |
2314 |
| Watanabe et al. Biophys. Vol. 11, 73 (2015) |
A new antigenic marker specifically labels a subpopulation of the class II
Kenyon cells in the brain of the European honeybee Apis mellifera |
0 |
2288 |
| Fujii et al. Biophys. Vol. 11, 67 (2015) |
In vitro directed evolution of alpha-hemolysin by liposome display |
5 |
3888 |
| Katayama et al. Biophys. Vol. 11, 61 (2015) |
FTIR study of primate color visual pigments |
5 |
2211 |
| Dyakonova et al. Biophys. Vol. 11, 55 (2015) |
The activity of isolated snail neurons controlling locomotion is affected
by glucose |
22 |
2356 |
| Ikezaki et al. Biophys. Vol. 11, 47 (2015) |
Lever arm extension of myosin VI is unnecessary for the adjacent binding
state |
1 |
2441 |
| Wijaya, et al. Biophys. Vol. 11, 39 (2015) |
FTIR study of CPD photolyase with substrate in single strand DNA |
9 |
2625 |
| Ito et al. Biophys. Vol. 11, 33 (2015) |
Thermodynamic implications of high Q10 of thermoTRP channels in living
cells |
33 |
2905 |
| Hsu et al. Biophys. Vol. 11, 25 (2015) |
Role of TRP channels in the induction of heat shock proteins (Hsps) by
heating skin |
15 |
3180 |
| Ho et al. Biophys.
Vol. 11, 17 (2015) |
TRP channels in skin: from physiological implications to clinical
significances |
42 |
4177 |
| Lin et al. Biophys.
Vol. 11, 9 (2015) |
Electrophysiological characteristics of IB4-negative TRPV1-expressing
muscle afferent DRG neurons |
5 |
2530 |
| Ito Biophys. Vol. 11, 7 (2015) |
Preface of Special Issue “TRP channels: their functional roles in medical
sciences” |
0 |
1104 |
| Yamagishi et al. Biophys. Vol. 11, 1 (2015) |
Effects of serotonin on the heartbeat of pond snails in a hunger state |
12 |
2884 |
| Hiroshi Sunada et al. Biophys. Vol. 10, 121 (2014) |
Electrophysiological characteristics of feeding-related neurons after
taste avoidance Pavlovian conditioning in Lymnaea stagnalis |
10 |
783 |
| Hideki Itoh et al. Biophys. Vol. 10, 109 (2014) |
Microscopic heat pulse-induced calcium dynamics in single WI-38
fibroblasts |
22 |
1052 |
| Ken Nishikawa et al. Biophys. Vol. 10, 99 (2014) |
Cooperation between phenotypic plasticity and genetic mutations can
account for the cumulative selection in evolution |
9 |
984 |
| Nishikawa et al. Biophys. Vol. 10, 89 (2014) |
3-D structural analysis of the crucial intermediate of skeletal muscle
myosin and its role in revised actomyosin cross-bridge cycle |
3 |
702 |
| Takigami et al. Biophys. Vol. 10, 77 (2014) |
Morphological and physiological characteristics of dermal photoreceptors
in Lymnaea stagnalis |
5 |
1043 |
| Fujita et al. Biophys. Vol. 10, 69 (2014) |
Myosin V is a biological Brownian machine |
0 |
1006 |
| Hashimoto Biophys. Vol. 10, 63 (2014) |
Structural and mutation studies of two DNA demethylation related
glycosylases: MBD4 and TDG |
6 |
948 |
| Sharma et al. Biophys. Vol. 10, 55 (2014) |
Familial clustering of mice consistent to known pedigrees enabled by the
genome profiling (GP) method |
3 |
859 |
| Watabe et al. Biophys. Vol. 10, 49 (2014) |
Ultrasensitive enzyme-linked immunosorbent assay (ELISA) of proteins by
combination with the thio-NAD cycling method |
37 |
1921 |
| Fujiwara et al. Biophys. Vol. 10, 43 (2014) |
Reconstitution of intracellular environments in vitro and in artificial
cells |
14 |
3945 |
| Nakamura et al. Biophys. Vol. 10, 35 (2014) |
Effect of the MotB(D33N) mutation on stator assembly and rotation of the
proton-driven bacterial flagellar motor |
5 |
937 |
| Fujisawa et al. Biophys. Vol. 10, 25 (2014) |
Uncovering the mechanism for selective control of the visible and near-IR
absorption bands in bacteriochlorophylls a, b and g |
1 |
890 |
| Arai et al. Biophys. Vol. 10, 15 (2014) |
Optimal terminal sequences for continuous or serial isothermal
amplification of dsRNA with norovirus RNA replicase |
1 |
1016 |
| Qin et al. Biophys. Vol. 10, 9 (2014) |
α-helix formation rate of oligopeptides at subzero temperatures |
1 |
961 |
| Yamazaki et al. Biophys. Vol. 10, 1 (2014) |
Mapping of the local environmental changes in proteins by cysteine
scanning |
5 |
1305 |
| Yoshioka et al. Biophys. Vol. 9, 183 (2013) |
Physical aspects of sensory transduction on seeing, hearing and
smelling |
6 |
1035 |
| Castillo et al. Biophys. Vol. 9, 173 (2013) |
The C-terminal periplasmic domain of MotB is responsible for
load-dependent control of the number of stators of the bacterial flagellar
motor |
31 |
1150 |
| Fukuda et al. Biophys. Vol. 9, 167 (2013) |
Detection of a protein-bound water vibration of halorhodopsin in aqueous
solution |
7 |
665 |
| Otsuka et al. Biophys. Vol. 9, 161 (2013) |
Increase in cyclic AMP concentration in a cerebral giant interneuron
mimics part of a memory trace for conditioned taste aversion of the pond
snail |
17 |
558 |
| Aoki et al. Biophys. Vol. 9, 149 (2013) |
Single molecule FRET observation of kinesin-1's head-tail interaction on
microtubule |
7 |
977 |
| Ishikawa Biophys. Vol. 9, 141 (2013) |
3D structure of eukaryotic flagella/cilia by cryo-electron tomography |
3 |
932 |
| Kobayashi et al. Biophys. Vol. 9, 131 (2013) |
Recent structural studies on Dom34/aPelota and Hbs1/aEF1α: important
factors for solving general problems of ribosomal stall in translation |
6 |
602 |
| Furutani et al. Biophys. Vol. 9, 123 (2013) |
Development of a rapid Buffer-exchange system for time-resolved ATR-FTIR
spectroscopy with the step-scan mode |
9 |
949 |
| Kawabata et al. Biophys. Vol. 9, 113 (2013) |
LigandBox: A database for 3D structures of chemical compounds |
26 |
1570 |
| Toyabe et al. Biophys. Vol. 9, 107 (2013) |
Information-to-free-energy conversion: Utilizing thermal fluctuations |
3 |
1073 |
| Matsuo et al. Biophys. Vol. 9, 99 (2013) |
Difference in hydration structures between F-actin and myosin
subfragment-1 detected by small-angle X-ray and neutron scattering |
9 |
845 |
| Toyabe et al. Biophys. Vol. 9, 91 (2013) |
Experimental thermodynamics of single molecular motor |
14 |
1128 |
| Nagata et al. Biophys. Vol. 9, 85 (2013) |
Contribution of a visual pigment absorption spectrum to a visual function:
depth perception in a jumping spider |
1 |
975 |
| Tomisawa et al. Biophys. Vol. 9, 79 (2013) |
A new approach to detect small peptides clearly and sensitively by Western
blotting using a vacuum-assisted detection method |
10 |
1009 |
| Itabashi et al. Biophys. Vol. 9, 73 (2013) |
Responses of chromosome segregation machinery to mechanical perturbations |
2 |
742 |
| Moriya et al. Biophys. Vol. 9, 63 (2013) |
Role of the Dc domain of the bacterial hook protein FlgE in hook assembly
and function |
13 |
780 |
| Kato et al. Biophys. Vol. 9, 57 (2013) |
Crystal structure of channelrhodopsin, a light-gated cation channel - all
cations lead through the monomer - |
7 |
801 |
| Watanabe Biophys. Vol. 9, 51 (2013) |
Rotary catalysis of FoF1-ATP synthase |
5 |
893 |
| Kinoshita et al. Biophys. Vol. 9, 37 (2013) |
Characterization of the ordered phase formed by sphingomyelin analogues
and cholesterol binary mixtures |
12 |
1013 |
| Nakamura et al. Biophys. Vol. 9, 31 (2013) |
Mechanism of the nucleotidyl-transfer reaction in DNA polymerase revealed
by time-resolved protein crystallography |
7 |
892 |
| Yoshizumi et al. Biophys. Vol. 9, 21 (2013) |
Expression, purification and biochemical characterization of the
cytoplasmic loop of PomA, a stator component of the Na+ driven flagellar
motor |
2 |
695 |
| Maruta et al. Biophys. Vol. 9, 13 (2013) |
Single turnovers of fluorescent ATP bound to bipolar myosin filament
during actin filaments sliding |
2 |
778 |
| Kobayashi et al. Biophys. Vol. 9, 1 (2013) |
Distinct Conformation of ATP Molecule in Solution and on Protein |
19 |
1544 |
| Nishimura et al. Biophys. Vol. 8, 173 (2012) |
Phase dependency of long-term potentiation induction during the
intermittent bursts of carbachol-induced β oscillation in rat hippocampal
slices |
1 |
578 |
| Yoshida Biophys. Vol. 8, 163 (2012) |
Self-oscillating gels beating like a heart muscle |
15 |
1290 |
| Mitsui et al. Biophys. Vol. 8, 151 (2012) |
Proposed model for the flagellar rotary motor with shear stress
transmission |
0 |
746 |
| Koyama et al. Biophys. Vol. 8, 145 (2012) |
Mechanistic insights from the recent structures of the CRM1 nuclear export
complex and its disassembly intermediate |
5 |
699 |
| Higo et al. Biophys. Vol. 8, 139 (2012) |
Virtual states introduced for overcoming entropic barriers in
conformational space |
10 |
627 |
| Du et al. Biophys. Vol. 8, 127 (2012) |
A scoring function based on solvation thermodynamics for protein structure
prediction |
1 |
1265 |
| Hayashi et al. Biophys. Vol. 8, 115 (2012) |
Full-Quantum chemical calculation of the absorption maximum of
bacteriorhodopsin: a comprehensive analysis of the amino acid residues
contributing to the opsin shift |
5 |
1156 |
| Hayashi et al. Biophys. Vol. 8, 111 (2012) |
Extraction and purification of a luminiferous substance from the luminous
mushroom Mycena chlorophos |
10 |
1270 |
| Eugene et al. Biophys. Vol. 8, 103 (2012) |
Comparative study of the different mechanisms for zinc ion stress sensing
in two cyanobacterial strains, Synechococcus sp. PCC 7942 and Synechocystis
sp. PCC 6803 |
4 |
689 |
| Mizuno et al. Biophys. Vol. 8, 95 (2012) |
mDia1 and formins: screw cap of the actin filament |
10 |
836 |
| Kinjo et al. Biophys. Vol. 8, 79 (2012) |
GIRAF: a method for fast search and flexible alignment of ligand binding
interfaces in proteins at atomic resolution |
4 |
791 |
| Watanabe et al. Biophys. Vol. 8, 73 (2012) |
Chemomechanical coupling of F1-ATPase under hydrolysis conditions |
2 |
679 |
| Hayashi et al. Biophys. Vol. 8, 67 (2012) |
Measurements of the driving forces of bio-motors using the fluctuation
theorem |
11 |
1285 |
| Fukuoka et al. Biophys. Vol. 8, 59 (2012) |
Coordinated regulation of multiple flagellar motors by the Escherichia
coli chemotaxis system |
6 |
1064 |
| Taniguchi et al. Biophys. Vol. 8, 51 (2012) |
Mechanical unfolding studies of protein molecules |
4 |
1083 |
| Murakami et al. Biophys. Vol. 8, 41 (2012) |
Rigor of cell fate decision by variable p53 pulses and roles of
cooperative gene expression by p53 |
3 |
842 |
| Mitsui et al. Biophys. Vol. 8, 27 (2012) |
Theory of muscle contraction mechanism with cooperative interaction among
crossbridges |
7 |
1288 |
| Jia et al. Biophys. Vol. 8, 21 (2012) |
Flow birefringence property of desmin filaments |
0 |
649 |
| Kamiguri et al. Biophys. Vol. 8, 11 (2012) |
Contraction behaviors of Vorticella sp. stalk investigated using
high-speed video camera. II: Viscosity effect of several types of polymer
additives |
2 |
852 |
| Kamiguri et al. Biophys. Vol. 8, 1 (2012) |
Contraction behaviors of Vorticella sp. stalk investigated using
high-speed video camera. I: Nucleation and growth model |
4 |
1052 |
| Tsukazaki et al.
Biophys. Vol. 7, 129 (2011) |
The mechanism of protein export enhancement by the SecDF membrane
component |
5 |
821 |
| Miyakawa et al. Biophys. Vol. 7, 123 (2011) |
Regulatory mechanism of abscisic acid signaling |
10 |
911 |
| Yoshidome Biophys. Vol. 7, 113 (2011) |
Importance of water entropy in rotation mechanism of F1-ATPase |
1 |
931 |
| Yoshii et al. Biophys. Vol. 7, 105 (2011) |
Kinetics of binding and diffusivity of leucine-enkephalin in large
unilamellar vesicle by pulsed-field-gradient 1H NMR in situ |
6 |
729 |
| Gerle Biophys. Vol. 7, 99 (2011) |
Stabilization of Fo/Vo/Ao by a radial electric field |
2 |
752 |
| Iwata et al. Biophys. Vol. 7, 89 (2011) |
Light-induced structural changes of the LOV2 domains in various
phototropins revealed by FTIR spectroscopy |
1 |
824 |
| Sugawara et al. Biophys. Vol. 7, 77 (2011) |
Chemophoresis as a driving force for intracellular organization: Theory
and application to plasmid partitioning |
35 |
1280 |
| Mizuno et al. Biophys. Vol. 7, 69 (2011) |
Staurosporine induces lamellipodial widening in locomoting fish
keratocytes by abolishing the gradient from radial extension of leading edge |
4 |
712 |
| Koike et al. Biophys. Vol. 7, 59 (2011) |
Characterization of the flagellar motor composed of functional GFP-fusion
derivatives of FliG in the Na+-driven polar flagellum of Vibrio alginolyticus |
3 |
849 |
| Sudo et al. Biophys. Vol. 7, 51 (2011) |
Functional expression of a two-transmembrane HtrII protein using cell-free
synthesi |
0 |
941 |
| Kitagawa et al. Biophys. Vol. 7, 35 (2011) |
Roles of the C-terminal residues of calmodulin in structure and function |
5 |
915 |
| Jia et al. Biophys.
Vol. 7, 29 (2011) |
Limited digestion of α-actinin in the presence of F-actin |
0 |
724 |
| Iwamoto Biophys. Vol. 7, 21 (2011) |
Structure, function and evolution of insect flight muscle |
45 |
2331 |
| Honda et al. Biophys. Vol. 7, 11 (2011) |
Two-dimensional periodic texture of actin filaments formed upon drying |
2 |
1005 |
| Shiba et al. Biophys. Vol. 7, 1 (2011) |
Systematic alanine insertion reveals the essential regions that encode
structure formation and activity of dihydrofolate reductase |
4 |
1300 |
| Watanabe et al. Biophys. Vol. 6, 67 (2010) |
Molecular mechanism of long-range synergetic color tuning between multiple
amino acid residues in conger rhodopsin |
13 |
923 |
| Haruyama et al. Biophys. Vol. 6, 59 (2010) |
Inhibition of thermophilic F1-ATPase by the ε subunit takes different path
from the ADP-Mg inhibition |
10 |
1037 |
| Sakata et al. Biophys. Vol. 6, 53 (2010) |
Estimation for diameter of superparamagnetic particles in Daphnia resting
eggs |
1 |
634 |
| Kitagawa et al. Biophys. Vol. 6, 37 (2010) |
Modeling of the gap junction of pancreatic β-cells and the robustness of
insulin secretion |
5 |
873 |
| Nishikata et al. Biophys. Vol. 6, 27 (2010) |
Molecular modeling of the HAMP domain of sensory rhodopsin II transducer
from Natronomonas pharaonis |
3 |
1010 |
| Matsuo et al. Biophys. Vol. 6, 13 (2010) |
X-ray fiber diffraction modeling of structural changes of the thin
filament upon activation of live vertebrate skeletal muscles |
6 |
1142 |
| Sato et al. Biophys. Vol. 6, 1 (2010) |
Actin oligomers at the initial stage of polymerization induced by
increasing temperature at low ionic strength: Study with small-angle X-ray
scattering |
7 |
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| Suda et al. Biophys. Vol. 5, 59 (2009) |
Analyzing observed or hidden heterogeneity on survival and mortality in an
isogenic C. elegans cohort |
7 |
639 |
| Nishikawa Biophys. Vol. 5, 53 (2009) |
Natively unfolded proteins: An overview |
19 |
1086 |
| Sudo et al. Biophys. Vol. 5, 45 (2009) |
Comparative study of the ion flux pathway in stator units of proton- and
sodium-driven flagellar motors |
21 |
1137 |
| Kinjo Biophys. Vol. 5, 37 (2009) |
Profile conditional random fields for modeling protein families with
structural information |
3 |
911 |
| Fukagawa et al. Biophys. Vol. 5, 25 (2009) |
Stochastic emergence of multiple intermediates detected by single-molecule
quasi-static mechanical unfolding of protein |
1 |
855 |
| Majima Biophys. Vol. 5, 11 (2009) |
Load-dependent sliding direction change of a myosin head on an actin
molecule and its energetic aspects: Energy borrowing model of a cross-bridge
cycle |
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